TFTAK Scientific Research
Key Publications by #teamTFTAK
2026
Latrofa, V., Kaleda, A., Porfido, C., Caponio, G. R., Natrella, G., De Angelis, D., Terzano, R., Pasqualone, A.
Arabinoxylan-enriched fraction from durum wheat meal modulates structure, texture, nutritional and sensory properties of extruded snacks. https://doi.org/10.1002/jsfa.71033
Vaikma, H., Metsoja, G., Zhogoleva, A., Videvik, A., Rosenvald, S.
Characterisation of key aroma-active compounds in oven-cooked salmon and their occurrence in algal and plant oils. https://doi.org/10.1016/j.fufo.2026.101052
Pihelgas, S., Ehala-Aleksejev, K., Teder, H., Kazantseva, J.
Insights from adult gut microbiota using the Estonian cohort as a uniform model. https://doi.org/10.1038/s41598-026-50455-9
Latrofa, V., Kaleda, A., Angelis, D., Jakobson, K., Squeo, G., Caponio, F., Pasqualone, A., Summo, S.
Enhancing texturization of upcycled durum wheat meal protein through pH adjustment and low-moisture extrusion optimization. https://doi.org/10.1016/j.afres.2026.101925
Jakobson, K., Kaleda, A., Vaikma, H., Sats, A., Rosenvald, S., Kriščiunaite, T.
Particle size and surface morphology of plant protein powders determine the sensory perception of grittiness in liquid matrices. https://doi.org/10.1016/j.afres.2026.101699
2025
Latrofa, V., Kaleda, A., Angelis, D., Videvik, A., Vaikma, H., Summo, A.P & C.
Effect of Durum Wheat Meal Protein on the Techno-functional, Textural, Volatile, and Sensory Properties of Low-Moisture Texturized Vegetable Proteins. https://doi.org/10.1007/s11947-025-04032-z
Pihelgas, S., Ehala-Aleksejev, K., Kutti, M.-L., Kuldjärv, R., Kazantseva, J.
Impact of fresh and fermented vegetable consumption on gut microbiota and body composition: insights from diverse data analysis approaches. https://doi.org/10.3389/fnut.2025.1623710
Kaleda, A., Sharma, N., Jakobson, K., Stulova, I. and Rosenvald, S.
Fermentation by lactic acid bacteria during pea protein isolation reduces undesirable flavors and changes techno-functional properties. https://doi.org/10.1016/j.foodchem.2025.145380
Maasikmets, M., Kuldjärv, R., Antsmaa, E., Straumite, E., Pohjanheimo, T., Vaikma, H.
Consumer preferences for kimchi in Estonia, Latvia, and Finland: Napa cabbage and local vegetables (white cabbage, red cabbage, white turnip, beetroot). https://doi.org/10.1016/j.foodqual.2025.105622
Bashiri, B., Kaleda, A., Vilu, R.
Sustainable diets, from design to implementation by multi-objective optimization-based methods and policy instruments. https://doi.org/10.3389/fsufs.2025.1629739
Vaikma, H., Kern, M., Harwood, W. and Almli, V. L.
Consumer Perceptions of Sustainability Towards Ingredients, Packaging, Labelling, and Storage Conditions in Milk, Burger Products, and Plant-Based Alternatives: A Study in Sweden and Italy. https://doi.org/10.1016/j.fufo.2025.100635
Vaikma, H.
Unveiling the mindset: measuring consumer perception towards the dimensions of sustainability. https://doi.org/10.1016/j.sftr.2025.100616
Vaikma, H., Maasikmets, M., Kuldjärv, R., Kutti, M.-L., Rosenvald, S., Straumite, E. and Stulova, I.
Sensory perception and preferences of oat-based vanilla-flavoured frozen desserts among children (aged 8–16) and adults. https://doi.org/10.1016/j.foodqual.2025.105533
Murniece, R., Reidzane, S., Radenkovs, V., Straumite, E., Keke, A., Kobrin, E.-G. Klava, D.
Scald Fermentation Time as a Factor Determining the Nutritional and Sensory Quality of Rye Bread. https://doi.org/10.3390/foods14060979
Ehala-Aleksejev, K., Pihelgas, S., Kazantseva, J.
Consuming a High-Pectin Smoothie Has Different Effects on the Uric Acid Levels and Gut Microbiota of Healthy Women. https://doi.org/10.3390/applmicrobiol5010031
Bashiri, B., Kaleda, A., Vilu, R.
Integrating Multi-Criteria Decision-Making with Multi-Objective Optimization for Sustainable Diet Design.
https://doi.org/10.1016/j.jclepro.2025.145233
Abner, K., Šverns, P., Arold, J., Lints, T., Eller, N.-A., Morell, I., Seiman, S., Adamberg, K., Vilu, R.
The design of unit cells by combining the self-reproduction systems and metabolic cushioning loads. https://doi.org/10.1038/s42003-025-07655-2
Zeinatulina, A., Tanilas, K., Ehala-Aleksejev, K., Viiard, E., Kriščiunaite, T.
Digestibility of protein and estimated bioavailability of mineral compounds in plant-based yoghurt alternatives. https://doi.org/10.1016/j.fufo.2025.100545
Rahmani, R., Bashiri, P., Lopes, S. I., Hussain, A., Maurya, H. S., Vilu R.
Sustainable Additive Manufacturing: An Overview on Life Cycle Impacts and Cost Efficiency of Laser Powder Bed Fusion. https://doi.org/10.3390/jmmp9010018
Aryee, A.N.A., Tachie, C., Kaleda, A.,
Formation of volatile compounds in salt-mediated naturally fermented cassava. https://doi.org/10.1016/j.fochx.2024.102101
Berg, H. Y., Arju, G., Nisamedtinov, I.
Nitrogen Availability and Utilisation of Oligopeptides by Yeast in Industrial Scotch Grain Whisky Fermentation. https://doi.org/10.1080/03610470.2024.2389608
2024
Andreson, M., Kazantseva, J., Kallastu, A., Jakobson, T., Sarand, I., Kütt, M.-L.
Isolation and Identification of Novel Non-Dairy Starter Culture Candidates from Plant Matrix Using Backslopping Propagation. https://doi.org/10.3390/fermentation10120663
Bashiri, B., De Aguiar Saldanha Pinheiro A.C., Tappi, S., Rocculi, P., Kaleda, A., Vilu, R.
Life cycle assessment of laboratory-scale chitosan production: comparison of high-pressure processing-assisted and conventional methods. https://doi.org/10.3176/proc.2025.1.01
Bashiri, B., Kaleda, A., Gavrilova, O., Vilu, R.
A Culturally Acceptable Shift in Diet to Reduce Land Footprint: an Optimization Study for Estonia. doi.org/10.1007/s10666-024-09996-4
Kattel, A., Aro, V., Lahtvee, P.-J., Kazantseva, J., Jõers, A., Nahku, R., Belouah, I.
Exploring the resilience and stability of a defined human gut microbiota consortium: An isothermal microcalorimetric study. doi.org/10.1002/mbo3.1430
Timlin, M., Brodkorb, A., Harbourne, N., O'Callaghan, T. F., Drouin, G., Pacheco-Pappenheim, S., Hennessy, D., O'Donovan, M., Pierce, K. M., Corrigan, B. M., Murphy, J. P., Pismennõi, D., Taivosalo, A., Lints, T., Kriščiunaite, T., Vilu, R., Fitzpatrick, E., McCarthy, K., Sheehan, J. J.
Journal of Dairy Science The impact of seasonal calving systems with varying pasture allowance on Cheddar cheese composition, nutritional quality and ripening characteristics. doi.org/10.3168/jds.2024-24745
M. Zehtabvar, K. Taghandiki, D.Sardari, N. Madani, B.Bashiri
Review on the Application of Machine Learning in Gamma Spectroscopy: Challenges and Opportunities. doi.org/10.3390/spectroscj2030008
Samuel P. Forry, Stephanie L. Servetas, Jason G. Kralj, Keng Soh, Michalis Hadjithomas, Raul Cano, Martha Carlin, Maria G. de Amorim, Benjamin Auch, Matthew G. Bakker, Thais F. Bartelli, Juan P. Bustamante, Ignacio Cassol, Mauricio Chalita, Emmanuel Dias-Neto, Aaron Del Duca, Daryl M. Gohl, Jekaterina Kazantseva et al.
Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols. doi.org/10.1038/s41598-024-57981-4
Pihelgas, S., Ehala-Aleksejev, K., Adamberg, S. et al.
The gut microbiota of healthy individuals remains resilient in response to the consumption of various dietary fibers. doi.org/10.1038/s41598-024-72673-9
Bashiri, B., Cropotova, J., Kvangarsnes, K., Gavrilova, O., Vilu, R.
Environmental and Economic Life Cycle Assessment of Enzymatic Hydrolysis-Based Fish Protein and Oil Extraction. doi.org/10.3390/resources13050061
Pihelas, S., Ehala-Aleksejev, K., Kuldjärv, R., Jõeleht, A., Kazantseva, J., Adamberg, K.
Short-term pectin-enriched smoothie consumption has beneficial effects on the gut microbiota of low-fiber consumers. doi.org/10.1093/femsmc/xtae001
Li, B., Arju, G., Taivosalo, A., Lints, T., Krišciunaite, T., Vilu, R., Lyne, J., Roustel, S., Kelly, A.L., McSweeney, P.L.H.
Proteolytic activity of three variants of fermentation-produced chymosin on sodium caseinate and during Cheddar cheese ripening. doi.org/10.1016/j.idairyj.2023.105835
2023
Berg, H. Y., Arju, G., Becerra-Rodríguez, C., Galeote, V., Nisamedtinov, I.
Unlocking the secrets of peptide transport in wine yeast: insights into oligopeptide transporter functions and nitrogen source preferences. doi.org/10.1128/aem.01141-23
Andreson, M., Kazantseva, J., Malv, E., Kuldjärv, R., Priidik, R., Kütt, M.-L.
Evaluation of Microbial Dynamics of Kombucha Consortia upon Continuous Backslopping in Coffee and Orange Juice. 10.3390/foods12193545
Abner, K., Šverns, P., Arold, J., Morell, I., Lints, T., Medri, S., Seiman, A., Adamberg, K., Vilu, R.
Self-reproduction and doubling time limits of different cellular subsystems. 10.1038/s41540-023-00306-4
Traksmaa, A., Kaleda, A., Nurme, B., Laos, K.
Effect of quality properties of added gluten on the texture and sensory properties of rye and buckwheat breads. 10.15159/ar.23.082
Pismennõi, D., Kattel, A., Belouah, I., Nahku, R., Vilu, R., Kobrin, E.-G.
The Quantitative Measurement of Peptidoglycan Components Obtained from Acidic Hydrolysis in Gram-Positive and Gram-Negative Bacteria via Hydrophilic Interaction Liquid Chromatography Coupled with Mass Spectrometr. 10.3390/microorganisms11092134
Jakobson, K., Kaleda, A., Adra, K., Tammik, M.-L., Vaikma, H.; Kriščiunaite, T.; Vilu, R.
Characterization of techno-functional and sensory properties of commercial plant protein powders. 10.3390/foods12142805
Taivosalo, A, Stulova, I., Kütt, M.-L., Kriščiunaite, T., Lints, T., Gimaeva, T., Tamm, M.
Peptide Mapping with LC-HRMS and In-Silico Tools for Evaluation of Potential Allergenicity of Commercially Available Whey Protein Hydrolysates. 10.3390/app13137402
Zhogoleva, A., Alas, M., Rosenvald, S.
Characterization of odor-active compounds of various pea preparations by GC-MS, GC-O, and their correlation with sensory attributes. 10.1016/j.fufo.2023.100243
Bljahhina, A.; Kuhtinskaja, M.; Kriščiunaite, T.
Development of extraction method for determination of saponins in soybean-based yoghurt alternatives: effect of sample pH. 10.3390/foods12112164
Saarniit, K.; Lang, H.; Kuldjärv, R.; Laaksonen, O.; Rosenvald, S.
The Stability of Phenolic Compounds in Fruit, Berry, and Vegetable Purees Based on Accelerated Shelf-Life Testing Methodology. 10.3390/foods12091777
Kütt, M.-L.; Orgusaar, K.; Stulova, I.; Priidik, R.; Pismennõi, D.; Vaikma, H.; Kallastu, A.; Zhogoleva, A.; Morell, I.; Kriščiunaite, T.
Starter culture growth dynamics and sensorial properties of fermented oat drink. 10.1016/j.heliyon.2023.e15627
Bashiri B., Zehtabvar M., Gavrilova O., Vilu R.
Change in the carbon footprint of Iranians’ food consumption from 1961 to 2019: A decomposition analysis of drivers. 10.15159/ar.23.018
Lazouskaya, M.; Vetik, I.; Tamm, M.; Uppuluri, K.; Scheler, O.
Binary RuO2–CuO Electrodes Outperform RuO2 Electrodes in Measuring the pH in Food Samples. 10.1021/acsomega.3c00538
Bljahhina, A.; Pismennõi, D.; Kriščiunaite, T.; Kuhtinskaja, M.; Kobrin, E.-G.
Quantitative Analysis of Oat (Avena sativa L.) and Pea (Pisum sativum L.) Saponins in Plant-Based Food Products by Hydrophilic Interaction Liquid Chromatography Coupled with Mass Spectrometry. 10.3390/foods12050991
Kapitanov, I.; Raba, G.; Spulak, M.; Vilu, R.; Karpichev, Y.; Gathergood, N.
Design of Sustainable Ionic Liquids Based on L-Phenylalanine and L-Alanine Dipeptides: Synthesis, Toxicity and Biodegradation Studies. 10.1016/j.molliq.2023.121285
Kallastu, A.; Malv, E.; Aro, V.; Meikas, A.; Vendelin, M.; Kattel, A.; Nahku, R.; Kazantseva, K. Absolute quantification of viable bacteria abundances in food by next-generation sequencing: Quantitative NGS of viable microbes. 10.1016/j.crfs.2023.100443
Reidzane, S.; Gramatina, I.; Galoburda, R.; Komasilovs, V.; Zacepins, A.; Bljahhina, A.; Kince, T.; Traksmaa, A.; Klava, D. The changes of fructan, glucan and mannan in the technological process of the wholegrain wheat bead fermented with the spontaneous sourdough of hull-less barley. 10.3390/foods12010155
Ye Tian, Ying Zhou, Marie Kriisa, Maret Anderson, Oskar Laaksonen, Mary-Liis Kütt, Maike Föste, Małgorzata Korzeniowska, Baoru Yang. Effects of fermentation and enzymatic treatment on phenolic compounds and soluble proteins in oil press cakes of canola (Brassica napus). 10.1016/j.foodchem.2022.135339
Natalja Part, Jekaterina Kazantseva, Sirli Rosenvald, Aili Kallastu, Helen Vaikma, Tiina Kriščiunaite, Dmitri Pismennõi, Ene Viiard. Microbiological, chemical, and sensorial characterisation of commercially available plant-based yoghurt alternatives. 10.1016/j.fufo.2022.100212
Anna Kattel, Indrek Morell, Valter Aro, Petri-Jaan Lahtvee, Raivo Vilu, Arvi Jõers, Ranno Nahku
Detailed analysis of metabolism reveals growth-rate-promoting interactions between Anaerostipes caccae and Bacteroides spp. 10.1016/j.anaerobe.2022.102680
Xia, X.; Arju, G.; Taivosalo, A.; Lints, T.; Kriščiunaite, T.; Vilu, R.; Corrigan, B.M. ; Gai, N.; Fenelon, M.A.; Tobin, J.T.; Kilcawley, K.; Kelly, A.L.; McSweeney, P.L.H.; Sheehan, J.J. Effect of β-casein reduction and high heat treatment of micellar casein concentrate on proteolysis, texture and the volatile profile of resultant Emmental cheese during ripening. 10.1016/j.idairyj.2022.105540
2022
Vaikma, H.; Metsoja, G.; Bljahhina, A.; Rosenvald, S. Individual differences in sensitivity to bitterness focusing on oat and pea preparations. 10.1016/j.fufo.2022.100206
Eha, Kairit; Kaleda, Aleksei; Menert, Anne; Laos, Katrin. Water Sorption Behaviour of Commercial Furcellaran. 10.1016/j.heliyon.2022.e11056
Leppik, K.; Lang, H.; Kuhtinskaja, M.; Rosenvald, S.The Use of Lipid Oxidation Indicators to Assess the Quality Deterioration of Potato Chips during Accelerated Shelf-Life Tests. 10.36400/J.Food.Stab.5.2.2022-0015
Joncer Naibaho, Aneta Wojdyło, Małgorzata Korzeniowska, Oskar Laaksonen, Maike Föste, Mary-LiisKütt, BaoruYang.
Antioxidant activities and polyphenolic identification by UPLC-MS/MS of autoclaved brewers' spent grain. 10.1016/j.lwt.2022.113612
Kaarel Erik Hunt, Alfonso T. García-Sosa, Tatsiana Shalima, Uko Maran, Raivo Vilub and Tõnis Kanger
Deacetylation of HMO building blocks using immobilized CAL-B to synthesize 6'-GL, an HMO. 10.1039/D2OB00550F
Andreson, M.; Kazantseva, J.; Kuldjärv, R.; Malv, E.; Vaikma, H.; Kaleda, A.; Kütt, M-L.; Vilu, R.
Characterisation of chemical, microbial and sensory profiles of commercial kombuchas. 10.1016/j.ijfoodmicro.2022.109715
Krauter, V.; Leppik, K.; Bauer, A.-S.; Milousi, M.; Dörnyei, K. R.; Ganczewski, G.; Krepil, J.; Varzakas, T.
Cereal and Confectionary Packaging: Assessment of Sustainability and Environmental Impact with a Special Focus on Greenhouse Gas Emissions. 10.3390/foods11091347
Kriisa, M.; Taivosalo, A.; Föste, M.; Kütt, M-L.; Viirma, M.; Priidik, R.; Korzeniowska, M.; Tian, Y.; Laaksonen, O.; Yang, B.; Vilu, R. Effect of enzyme‐assisted hydrolysis on brewer's spent grain protein solubilization – peptide composition and sensory properties. 10.1016/j.afres.2022.100108
Ye Tian, Marie Kriisa, Maike Föste, Mary-Liis Kütt, Ying Zhou, Oskar laaksonen, Baoru Yang.
Impact of enzymatic pre-treatment on composition of nutrients and phytochemicals of canola (Brassica napus) oil press residues. 10.1016/j.foodchem.2022.132911
Arju, G.; Berg, H. Y.; Lints, T.; Nisamedtinov, I. Methodology for Analysis of Peptide Consumption by Yeast during Fermentation of Enzymatic Protein Hydrolysate Supplemented Synthetic Medium Using UPLC-IMS-HRMS. 10.3390/fermentation8040145
Sepp, E.; Smidt, I.; Rööp.; Štšepetova, J.; Kõljalg, S.; Mikelsaar, M.; Soidla, I.; Ainsaar, M.; Kolk, H.; Vallas, M.; Jaagura, M.; Mändar, R. Comparative analysis of gut microbiota in centenarians and young people: impact of eating habits and childhood living environment. 10.3389/fcimb.2022.851404
Kärt Leppik, Anna-Sophia Bauer, Victoria Krauter, Ioannis Anestopoulus, Kata Calic, Mihalis Panagiotidis, Maria Sagriopoulou, Theodoras, Varzakas, Ilke Uysal Ünalan, Maria Milousi. Cereal and Confectionary Packaging: Background, Application and Shelf-Life Extension. 10.3390/foods11050697
Kriščiunaite, T; Tanilas, K. Development of LC-MS-ESI-TOF method for quantification of phytates in food using 13C-labelled maize as internal standard. 10.1007/s00216-021-03770-1
Kokina, A.; Tanilas, K.; Ozolina, Z.; Pleiko, K.; Shvirksts, K.; Vamza, I.; Liepins, J. Purine Auxotrophic Starvation Evokes Phenotype Similar to Stationary Phase Cells in Budding Yeast. 10.3390/jof8010029
Madis Jaagura, Natalja Part, Kaarel Adamberg, Jekaterina Kazantseva, Ene Viiard. Consumption of multi-fiber enriched yogurt is associated with increase of bifidobacteria and butyrate producing bacteria in human fecal microbiota. 10.1016/j.jff.2021.104899
Naibaho, J.; Butula, N.; Jonuzi, E.; Korzeniowska, M.; Laaksonen, O.; Föste, M.; Kütt, M-L.; Yang, B.. Potential of brewers’ spent grain in yogurt fermentation and evaluation of its impact in rheological behaviour, consistency, microstructural properties and acidity profile during the refrigerated storage. 10.1016/j.foodhyd.2021.107412
2021
Gasik Michael; Ivanov Roman; Kazantseva Jekaterina; Bilotsky Yevgen; Hussainova Irina (2021). Biomechanical Features of Graphene-Augmented Inorganic Nanofibrous Scaffolds and Their Physical Interaction with Viruses. 2D Materials, 14 (1), 164. 10.3390/ma14010164
Reidzane, S.; Kruma, Z.; Kazantseva, J.; Traksmaa, A.; Klava, D. (2021). Determination of technological parameters and characterization of microbiota of the spontaneous sourdough fermentation of hull-less barley. Foods, 10 (10). 10.3390/foods10102253
Pismennõi, Dmitri; Kiritsenko, Vassili; Marhivka, Jaroslav; Kütt, Mary-Liis; Vilu, Raivo (2021). Development and Optimisation of HILIC-LC-MS Method for Determination of Carbohydrates in Fermentation Samples. Molecules, 26 (12), 3669. 10.3390/molecules26123669
Uppuluri, K.; Szwagierczak, D.; Zaraska, K.; Lazouskaya, M.; Tamm, M. (2021). Fabrication, Potentiometric Characterization, and Application of Screen-Printed RuO2 pH Electrodes for Water Quality Testing. Sensors, 21 (5399). 10.3390/s21165399
Lazouskaya, Maryna; Stulova, Irina; Sõrmus, Aavo; Scheler, Ott; Tiisma, Kalle; Vinter, Toomas; Loov, Roman; Tamm, Martti (2021). Front-face Fluorimeter for the Determination of Cutting Time of Cheese Curd. Foods, 10, 576. 10.3390/foods 10030576
Angelis, D. De; Kaleda, A.; Pasqualone, A.; Vaikma, H.; Squeo, G.; Caponio, F.; Summo, C. (2021). How to Balance the Yield and Protein Content of Air-classified Pulse Flour: the Influence of the Restriction Valve. Chemical Engineering Transactions, 87, 241−246. 10.3303/CET2187041
Laaksonen, Oskar; Kahala, Minna; Marsol-Vall, Alexis; Blasco, Lucia; Järvenpää, Eila; Rosenvald, Sirli; Virtanen, Mikaa; Tarvainen, Marko; Yang, Baoru. (2021). Impact of lactic acid fermentation on sensory and chemical quality of dairy analogues prepared from lupine (Lupinus angustifolius L.) seeds. Food Chemistry, 346, 128852 10.1016/j.foodchem.2020.128852
Eha, Kairit; Pehk, Tõnis; Heinmaa, Ivo; Kaleda, Aleksei; Laos, Katrin (2021). Impact of short-term heat treatment on the structure and functional properties of commercial furcellaran compared to commercial carrageenans. Heliyon, 7, e06640 10.1016/j.heliyon.2021.e06640
Jaagura, Madis; Viiard, Ene; Karu‐Lavits, Kätrin; Adamberg, Kaarel (2021). Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota. MicrobiologyOpen, 10 (3). 10.1002/mbo3.1194
Vaikma, H.; Kaleda, A.; Rosend, J.; Rosenvald, S. (2021). Market mapping of plant-based milk alternatives by using sensory (RATA) and GC analysis. Future Foods, 4. 10.1016/j.fufo.2021.100049
Kazantseva, Jekaterina; Malv, Esther; Kaleda, Aleksei; Kallastu, Aili; Meikas, Anne (2021). Optimisation of sample storage and DNA extraction for human gut microbiota studies. BMC Microbiology, 21, 158. 10.1186/s12866-021-02233-y
Kaleda, A.; Talvistu, K.; Vaikma, H.; Tammik, M.-L.; Rosenvald, S.; Vilu, R. (2021). Physicochemical, textural, and sensorial properties of fibrous meat analogs from oat-pea protein blends extruded at different moistures, temperatures, and screw speeds. Future Foods, 4 (100092). 10.1016/j.fufo.2021.100092
Kivima, E.; Tanilas, K.; Martverk, K.; Rosenvald, S.; Timberg, L.; Laos, K. (2021). The Composition, Physicochemical Properties, Antioxidant Activity, and Sensory Properties of Estonian Honeys. Foods, 10 (3), #511. 10.3390/foods10030511
2020
Maser, A.; Peebo, K.; Vilu, R.; Nahku, R. (2020). Amino acids are key substrates to Escherichia coli BW25113 for achieving high specific growth rate. Research in Microbiology, 171 (5-6), 185−193. 10.1016/j.resmic.2020.02.001
Arju, G.; Taivosalo, A.; Pismennoi, D.; Lints, T.; Vilu, R.; Daneberga, Z.; Vorslova, S.; Renkonen, R.; Joenvaara, S. (2020). Application of the UHPLC-DIA-HRMS Method for Determination of Cheese Peptides. Foods, 9 (8), #979. 10.3390/foods9080979
Karron, E.; Runno-Paurson, E.; Lõiveke, H.; Islamov, B.; Kütt, M.-L.; Talve, T.; Lauringson, E.; Hõrak, H.; Edesi, E.; Niinemets, Ü. (2020). Application of widely used fungicides does not necessarily affect grain yield, and incidence of Fusarium spp. and mycotoxins DON, HT-2 and T-2 in spring barley in northern climates. KVASNY PRUMYSL, 66 (1), 215−223. 10.18832/kp2020.66.215
Witter, Steffi; Arju, Georg; Junusova, Marina; Kuhtinskaja, Maria; Samoson, Ago; Witter, Raiker; Vilu, Raivo (2020). Compound’s Pre-Screening of Withania somnifera, Baccopa monnieri and Centella asiatica Extracts. Journal of Biosciences and Medicines, 8 (9), 80−98. 10.4236/jbm.2020.89007
Kirsipuu, T.; Zadorožnaja, A.; Smirnova, J.; Friedemann, M.; Plitz, T.; Tõugu, V.; Palumaa, P. (2020). Copper(II)-binding equilibria in human blood. Scientific Reports, 10 (1), #5686. 10.1038/s41598-020-62560-4
Jõers, Arvi; Liske, Eliis; Tenson, Tanel (2020). Dividing subpopulation of Escherichia coli in stationary phase. Research in Microbiology, 171 (3-4), 153−157. 10.1016/j.resmic.2020.02.002
Kaleda, Aleksei; Talvistu, Karel; Tamm, Martti; Viirma, Maret; Rosend, Julia; Tanilas, Kristel; Kriisa, Marie; Part, Natalja; Tammik, Mari-Liis (2020). Impact of Fermentation and Phytase Treatment of Pea-Oat Protein Blend on Physicochemical, Sensory, and Nutritional Properties of Extruded Meat Analogs. Foods, 9 (8), 1059. 10.3390/foods9081059
Friedenthal, M.; Eha, K.; Kaleda, A.; Part, N.; Laos, K. (2020). Instability of low-moisture carrageenans as affected by water vapor sorption at moderate storage temperatures. SN Applied Sciences, 2, #243 . 10.1007/s42452-020-2032-9
Arike, Liisa; Seiman, Andrus; van der Post, Sjoerd; Pineiro, Ana M. Rodriguez; Ermund, Anna; Schutte, Andre; Backhed, Fredrik; Johansson, Malin E. V.; Hansson, Gunnar C. (2020). Protein Turnover in Epithelial Cells and Mucus along the Gastrointestinal Tract Is Coordinated by the Spatial Location and Microbiota. Cell Reports, 30 (4), 1077−1091. 10.1016/j.celrep.2019.12.068
Witter, S.; Samoson, A.; Vilu, R.; Witter, R. (2020). Screening of Nutraceuticals and Plant Extracts for Inhibition of Amyloid-beta Fibrillation. Journal of Alzheimer's Disease, 73 (3), 1003−1012. 10.3233/JAD-190758
Kamboj, N.; Kazantseva, J.; Rahmani, R.; Rodríguez, M. A.; Hussainova, I. (2020). Selective laser sintered bio-inspired silicon-wollastonite scaffolds for bone tissue engineering. Materials Science and Engineering C, 116, #111223. 10.1016/j.msec.2020.111223
Štšepetova, J.; Baranova, J.; Simm, J.; Parm, Ü.; Rööp, T.; Sokmann, S.; Korrovits, P.; Jaagura, M.; Rosenstein, K.; Salumets, A.; Mändar, R. (2020). The complex microbiome from native semen to embryo culture environment in human in vitro fertilization procedure. Reproductive Biology and Endocrinology, 18 (1), 1−13. 10.1186/s12958-019-0562-z
Adamberg, K.; Jaagura, M.; Aaspõllu, A.; Nurk, E.; Adamberg, S. (2020). The composition of faecal microbiota is related to the amount and variety of dietary fibres. International Journal of Food Sciences and Nutrition. 10.1080/09637486.2020.1727864
Adamberg, Kaarel; Raba, Grete; Adamberg, Signe (2020). Use of Changestat for Growth Rate Studies of Gut Microbiota. Frontiers in Bioengineering and Biotechnology, 8, ARTN 24. 10.3389/fbioe.2020.00024
Rosend, J.; Kaleda, A.; Kuldjärv, R.; Arju, G.; Nisamedtinov, I. (2020). The effect of apple juice clarification and concentration on cider fermentation and properties of the final product. Foods, 9, 1401. 10.3390/foods9101401
2019
Maser, A.; Peebo, K.; Nahku, R. (2019). Avoiding amino acid depletion in a complex medium results in improved Escherichia coli BW25113 growth. Microbiology, 165 (1), 37−46. 10.1099/mic.0.000742
Gawin, Agnieszka; Peebo, Karl; Hans, Sebastian; Ertesvag, Helga; Irla, Marta; Neubauer, Peter; Brautaset, Trygve (2019). Construction and characterization of broad-host-range reporter plasmid suitable for on-line analysis of bacterial host responses related to recombinant protein production. Microbial Cell Factories, 18, ARTN 80. 10.1186/s12934-019-1128-7
Zekker, Ivar; Kiviruut, Aimar; Rikmann, Ergo; Mandel, Anni; Jaagura, Madis; Tenno, Toomas; Artemchuk, Oleg; Rubin, Sergio dC; Tenno, Taavo (2019). Enhanced Efficiency of Nitritating-Anammox Sequencing Batch Reactor Achieved at Low Decrease Rates of Oxidation-Reduction Potential. Environmental Engineering Science, 36 (3), 350−360. 10.1089/ees.2018.0225
Mandel, A.; Zekker, I; Jaagura, M.; Tenno, T. (2019). Enhancement of anoxic phosphorus uptake of denitrifying phosphorus removal process by biomass adaption. International Journal of Environmental Science and Technology, 16 (10), 5965−5978. 10.1007/s13762-018-02194-2
Kulikouskaya, V. I.; Lazouskaya, M. E.; Agabekov, V. E. (2019). Features of the Formation of Interpolyelectrolyte Complexes Based on Chitosan and Pectin. Theoretical and Experimental Chemistry, 54 (6), 375−385. 10.1007/s11237-019-09584-8
Puntscher, Hannes; Hankele, Svenja; Tillmann, Katharina; Attakpah, Eva; Braun, Dominik; Kütt, Mary-Liis; Del Favero, Giorgia; Aichinger, Georg; Pahlke, Gudrun; Hoeger, Harald; Marko, Doris; Warth, Benedikt (2019). First insights into Alternaria multi-toxin in vivo metabolism. Toxicology Letters, 301, 168−178. 10.1016/j.toxlet.2018.10.006
Markkinen, Niko; Laaksonen, Oskar; Nahku, Ranno; Kuldjärv, Rain; Yanga, Baoru (2019). Impact of lactic acid fermentation on acids, sugars, and phenolic compounds in black chokeberry and sea buckthorn juices. Food Chemistry, 286, 204−215. 10.1016/j.foodchem.2019.01.189
Taivosalo, A.; Kriščiunaite, T.; Stulova, I.; Part, N.; Rosend, J.; Sõrmus, A.; Vilu, R. (2019). Ripening of Hard Cheese Produced from Milk Concentrated by Reverse Osmosis. Foods, 8 (5), #165. 10.3390/foods8050165
Kaleda, A.; Haleva, L.; Sarusi, G.; Pinsky, T.; Mangiagalli, M.; Bar Dolev, M.; Lotti, M.; Nardini, M.; Braslavsky, I. (2019). Saturn-shaped ice burst pattern and fast basal binding of an ice-binding protein from an Antarctic bacterial consortium. Langmuir, 35 (23), 7337−7346. 10.1021/acs.langmuir.8b01914
Rosend, J.; Kuldjärv, R.; Rosenvald, S.; Paalme, T. (2019). The effects of apple variety, ripening stage, and yeast strain on the volatile composition of apple cider. Heliyon, 5 (6), #e01953. 10.1016/j.heliyon.2019.e01953
Rosend, J.; Kuldjärv, R.; Arju, G.; Nisamedtinov, I. (2019). Yeast performance characterisation in different cider fermentation matrices. Agronomy Research, 17 (5), 2040−2053. 10.15159/AR.19.178
2018
Peebo, K.; Neubauer, P. (2018). Application of Continuous Culture Methods to Recombinant Protein Production in Microorganisms. Microorganisms, 6 (3), #56. 10.3390/microorganisms6030056
Panebianco, C.; Kelman, E.; Vene, K.; Gioffreda, D.; Tavano, F.; Vilu, R.; Terracciano, F.; Pata, I.; Adamberg, K.; Andriulli, A.; Pazienza, V. (2018). Cancer sniffer dogs: how can we translate this peculiarity in the laboratory medicine? Results of a pilot study on gastrointestinal cancers. Clinical Chemistry and Laboratory Medicine (CCLM), 56 (1), 138−146. 10.1515/cclm-2016-1158
Adamberg, Kaarel; Adamberg, Signe; Ernits, Karin; Larionova, Anneli; Voor, Tiia; Jaagura, Madis; Visnapuu, Triinu; Alamäe, Tiina (2018). Composition and metabolism of fecal microbiota from normal and overweight children are differentially affected by melibiose, raffinose and raffinose-derived fructans. Anaerobe, 52, 100−110. 10.1016/j.anaerobe.2018.06.009
Taivosalo, A.; Kriščiunaite, T.; Seiman, A.; Part, N.; Stulova, I.; Vilu, R. (2018). Comprehensive analysis of proteolysis during 8 months of ripening of high-cooked Old Saare cheese. Journal of Dairy Science, 101 (2), 944−967. 10.3168/jds.2017-12944
Aichinger, Georg; Puntscher, Hannes; Beisl, Julia; Kütt, Mary-Liis; Warth, Benedikt; Marko, Doris (2018). Delphinidin protects colon carcinoma cells against the genotoxic effects of the mycotoxin altertoxin II. Toxicology Letters, 284, 136−142. 10.1016/j.toxlet.2017.12.002
Kulikouskaya, V. I.; Lazouskaya, M. E.; Kraskouski, A. N.; Agabekov, V. E. (2018). Formation and Properties of Multilayer Films Based on Polyethyleneimine and Bovine Serum Albumin. Russian Journal of Physical Chemistry A, 92 (1), 146−152. 10.1134/S0036024418010132
Kazantseva, J.; Ivanov, R.; Gasik, M.; Neuman, T.; Hussainova, I. (2018). Graphene-Augmented Nanofiber Scaffolds Trigger Gene Expressions Switching of Four Cancer Cell Types. ACS Biomaterials Science Engineering, 4 (5), 1622−1629. 10.1021/acsbiomaterials.8b00228
Kazantseva, J.; Hussainova, I.; Ivanov, R.; Neuman, T.; Gasik, M. (2018). Hybrid graphene–ceramic nanofibre network for spontaneous neural differentiation of stem cells. Interface Focus, 8 (3), #20170037. 10.1098/rsfs.2017.0037
Lozovskaya, M. E.; Kulikovskaya, V. I.; Ignatovich, Zh. V.; Koroleva, E. V.; Agabekov, V. E. (2018). Hydrogel Nanoparticles of Chitosan-Folic-Acid Conjugate with Imatinib Methanesulfonate. Pharmaceutical Chemistry Journal, 52 (2), 127−132. 10.1007/s11094-018-1777-6
Kaleda, A.; Tsanev, R.; Klesment, T.; Vilu, R.; Laos, K. (2018). Ice cream structure modification by ice-binding proteins. Food Chemistry, 246, 164−171. 10.1016/j.foodchem.2017.10.152
Panebianco, C.; Adamberg, K.; Jaagura, M.; Copetti, M.; Fontana, A.; Adamberg, S.; Kolk, K.; Vilu, R.; Andriulli, A.; Pazienza, V. (2018). Influence of gemcitabine chemotherapy on the microbiota of pancreatic cancer xenografted mice. Cancer Chemotherapy and Pharmacology, 81 (4), 773−782. 10.1007/s00280-018-3549-0
Stalidzans, Egils; Seiman, Andrus; Peebo, Karl; Komasilovs, Vitalijs; Pentjuss, Agris (2018). Model-based metabolism design: constraints for kinetic and stoichiometric models. Biochemical Society Transactions, 46 (2), 261−267. 10.1042/BST20170263
Sadam, Helle; Pihlak, Arno; Kivil, Anri; Pihelgas, Susan; Jaago, Mariliis; Adler, Priit; Vilo, Jaak; Vapalahti, Olli; Neuman, Toomas; Lindholm, Dan; Partinen, Markku; Vaheri, Antti; Palm, Kaia (2018). Prostaglandin D2 Receptor DP1 Antibodies Predict Vaccine-induced and Spontaneous Narcolepsy Type 1: Large-scale Study of Antibody Profiling. EBioMedicine, 29, 47−59. 10.1016/j.ebiom.2018.01.043
Del Favero, Giorgia; Woelflingseder, Lydia; Braun, Dominik; Puntscher, Hannes; Kütt, Mary-Liis; Dellafiora, Luca; Warth, Benedikt; Pahlke, Gudrun; Dall'Asta, Chiara; Adam, Gerhard; Marko, Doris (2018). Response of intestinal HT-29 cells to the trichothecene mycotoxin deoxynivalenol and its sulfated conjugates. Toxicology Letters, 295, 424−437. 10.1016/j.toxlet.2018.07.007
Kortesniemi, M.; Rosenvald, S.; Laaksonen, O.; Vanag, A.; Ollikka, T.; Vene, K.; Yang, B. (2018). Sensory and chemical profiles of Finnish honeys of different botanical origins and consumer preferences. Food Chemistry, 246, 351−359. 10.1016/j.foodchem.2017.10.069
Mangiagalli, M.; Sarusi, G.; Kaleda, A.; Bar Dolev, M.; Nardone, V.; Vena, V. F.; Braslavsky, I.; Lotti, M.; Nardini, M. (2018). Structure of a bacterial Ice Binding Protein with two faces of interaction with ice. FEBS Journal, 285, 1653−1666. 10.1111/febs.14434
Adamberg, K; Kolk, K; Jaagura, M; Vilu, R; Adamberg, S (2018). The composition and metabolism of faecal microbiota is specifically modulated by different dietary polysaccharides and mucin: an isothermal microcalorimetry study. Beneficial Microbes, 9 (1), 21−34. 10.3920/BM2016.0198
Puntscher, Hannes; Kütt, Mary-Liis; Skrinjar, Philipp; Mikula, Hannes; Podlech, Joachim; Fröhlich, Johannes; Marko, Doris; Warth, Benedikt (2018). Tracking emerging mycotoxins in food: development of an LC-MS/MS method for free and modified Alternaria toxins. Analytical and Bioanalytical Chemistry, 410 (18), 4481−4494. 10.1007/s00216-018-1105-8
2017
Paalme, T.; Vilbaste, A.; Kevvai, K.; Nisamedtinov, I.; Tanilas, K. (2017). Assessment of bioavailable B vitamin content in food using in vitro digestibility assay and LC-MS SIDA. Analytical and Bioanalytical Chemistry, 1−10. 10.1007/s00216-017-0592-3
Tripathi, V.; Edrisi, S. A.; Chen, B.; Gupta, V. K.; Vilu, R.; Gathergood, N.; Abhilash, P. C. (2017). Biotechnological Advances for Restoring Degraded Land for Sustainable Development. Trends in Biotechnology, 35 (9), 847−859. 10.1016/j.tibtech.2017.05.001
Mangiagalli, M.; Bar-Dolev, M.; Tedesco, P.; Natalello, A.; Kaleda, A.; Brocca, S.; de Pascale, D.; Pucciarelli, S.; Miceli, C.; Braslavsky, I.; Lotti, M. (2017). Cryo-protective effect of an ice-binding protein derived from Antarctic bacteria. FEBS Journal, 284 (1), 163−177. 10.1111/febs.13965
Panebianco, C.; Adamberg, K.; Adamberg, S.; Saracino, C.; Jaagura, M.; Kolk, K.; Di Chio, A. G.; Graziano, P.; Vilu, R.; Pazienza, V. (2017). Engineered Resistant-Starch (ERS) Diet Shapes Colon Microbiota Profile in Parallel with the Retardation of Tumor Growth in In Vitro and In Vivo Pancreatic Cancer Models. Nutrients, 9 (4), #331. 10.3390/nu9040331
Ruiz Rodriguez, Luciana G.; Aller, Kadri; Bru, Elena; De Vuyst, Luc; Hebert, Elvira M.; Mozzi, Fernanda (2017). Enhanced mannitol biosynthesis by the fruit origin strain Fructobacillus tropaeoli CRL 2034. Applied Microbiology and Biotechnology, 101 (15), 6165−6177. 10.1007/s00253-017-8395-1
Laaksonen, O.; Kuldjärv, R.; Paalme, T.; Mira Virkki, M.; Yang, B. (2017). Impact of apple cultivar, ripening stage, fermentation type and yeast strain on phenolic composition of apple ciders. Food Chemistry, 233, 29−37. 10.1016/j.foodchem.2017.04.067
Surženko, M.; Kontram, K.; Sarand, I. (2017). PCR–based fingerprinting and identification of contaminative fungi isolated from rye breads. Agronomy Research, 15 (1), 288−297.
Kirs, M.; Karo, E.; Lumi, P. (2017). Strategic Behaviour of Research Groups within the Entrepreneurial University Policy Rhetoric: The Estonian Biotechnology Sector. Science and Public Policy, 44 (6), 802−820. 10.1093/scipol/scx015
Akk, E., Søndergaard, T.E, Sørensen, J.L, Giese, H., Kütt, M.L., Edesi, L., Lõiveke, H. and E. Lauringson (2017). The effects of nitrogen rates and intercropping on the occurrence of Fusarium spp. on barley kernels. Agronomy Research, 15 (S2), 1267−1275.
2016
Laks, K.; Kirsipuu, T.; Dmitrijeva, T.; Salumets, A.; Palumaa, P. (2016). Assessment of Blood Contamination in Biological Fluids Using MALDI-TOF MS. The Protein Journal, 35 (3), 171−176. 10.1007/s10930-016-9657-y
Bondarenko, Olesja M; Ivask, Angela; Kahru, Anne; Vija, Heiki; Titma, Tiina; Visnapuu, Meeri; Joost, Urmas; Pudova, Ksenia; Adamberg, Signe; Visnapuu, Triinu; Alamäe, Tiina. (2016). Bacterial polysaccharide levan as stabilizing, non-toxic and functional coating material for microelement-nanoparticles. Carbohydrate Polymers, 136, 710−720. 10.1016/j.carbpol.2015.09.093
Viiard, E.; Bessmeltseva, M.; Simm, J.; Talve, T.; Aaspõllu, A; Paalme, T.; Sarand, I. (2016). Diversity and Stability of Lactic Acid Bacteria in Rye Sourdoughs of Four Bakeries with Different Propagation Parameters. PLoS ONE, 11 (2), e0148325. 10.1371/journal.pone.0148325
Kazantseva, J.; Ivanov, R.; Gasik, M.; Neuman, T.; Hussainova, I. (2016). Graphene-augmented nanofiber scaffolds demonstrate new features in cells behaviour. Scientific Reports, 6, #30150. 10.1038/srep30150
Jaagura, M.; Taal, K.; Koppel, I.; Tuvikene, J.; Timmusk, T.; Tamme, R. (2016). Rat NEURL1 3'UTR is alternatively spliced and targets mRNA to dendrites. Neuroscience Letters, 635, 71−76. 10.1016/j.neulet.2016.10.041
Kevvai, K.; Kütt, M.-L.; Nisamedtinov, I.; Paalme, T. (2016). Simultaneous utilization of ammonia, free amino acids and peptides during fermentative growth of Saccharomyces cerevisiae. Asymmetric Michael Addition of an Alanine Derivative, 122 (1), 110−115. 10.1002/jib.298
Kazantseva, J.; Sadam, H.; Neuman, T.; Palm, K. (2016). Targeted alternative splicing of TAF4: a new strategy for cell reprogramming. Scientific Reports, 6, 30852−30852. 10.1038/srep30852
Seisonen, S.; Vene, K.; Koppel, K. (2016). The current practice in the application of chemometrics for correlation of sensory and gas chromatographic data. Food Chemistry, 210 (1), 530−540. 10.1016/j.foodchem.2016.04.134
Sannik, Urmas; Pitk, Peep; Lepasalu, Lembit; Poikalainen, Väino (2016). Tool for the Assessment and Prediction of Animal By-product Resources. Waste and Biomass Valorization, 7 (2), 397−404. 10.1007/s12649-015-9447-3
Sadam, H.; Liivas, U.; Kazantseva, A.; Pruunsild, P.; Kazantseva, J.; Timmusk, T.; Neuman, T.; Palm, K. (2016). GLI2 cell-specific activity is controlled at the level of transcription and RNA processing: Consequences to cancer metastasis. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, 1862 (1), 46−55 10.1016/j.bbadis.2015.10.008
2015
Adamberg, K.; Valgepea, K.; Vilu, R. (2015). Advanced continuous cultivation methods for systems microbiology. Microbiology, 161 (9), 1707−1719. 10.1099/mic.0.000146
Sannik, Urmas; Lepasalu, Lembit; Soidla, Riina; Põldvere, Aarne; Saar, Raili; Tänavots, Alo; Poikalainen, Väino (2015). Calculation model for the assessment of animal by-product resources in Estonian meat industry. Agronomy Research, 13 (4), 1053−1063.
Seisonen, S.; Kivima, E.; Vene, K. (2015). Characterization of the aroma profile of different honeys and corresponding flowers using solid phase microextraction and gas chromatography-mass spectrometry/olfactometry. Food Chemistry, 169, 34−40. 10.1016/j.foodchem.2014.07.125
Kirsipuu, T.; Laks, K.; Velthut-Meikas, A.; Levkov, L.; Salumets, A.; Palumaa, P. (2015). Comprehensive elucidation of amino acid profile in human follicular fluid and plasma of in vitro fertilization patients. Gynecological Endocrinology, 31 (SUP1), 9−17. 10.3109/09513590.2015.1085186
Jõul, P.; Lees, H.; Vaher, M.; Kobrin, E-G.; Kaljurand, M.; Kuhtinskaja, M. (2015). Development of a capillary electrophoresis method with direct UV detection for the analysis of thiodiglycol and its oxidation products. Electrophoresis, 36, 1202−1207. 10.1002/elps.201500038
Vallner, L.; Gavrilova, O.; Vilu, R. (2015). Environmental risks and problems of the optimal management of an oil shale semi-coke and ash landfill in Kohtla-Järve, Estonia. The Science of The Total Environment, 524, 400−415. 10.1016/j.scitotenv.2015.03.130
Aller, Kadri; Adamberg, Kaarel; Reile, Indrek; Timarova, Veronica; Peebo, Karl; Vilu, Raivo (2015). Excess of threonine compared with serine promotes threonine aldolase activity in Lactococcus lactis IL1403. Microbiology, 161 (5), 1073−1080. 10.1099/mic.0.000071
Esquerre, T.; Moisan, A.; Chiapello, H.; Arike, L.; Vilu, R.; Gaspin, C.; Cocaign-Bousquet, M.; Girbal, L. (2015). Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates. BMC Genomics, 16, #275. 10.1186/s12864-015-1482-8
Yau, Johnathon; Hunt, Kaarel E.; McDougall, Laura; Kennedy, Alan R.; Nelson, David J. (2015). Half-sandwich nickel(II) complexes bearing 1,3-di(cycloalkyl)imidazol-2-ylidene ligands. Beilstein Journal of Organic Chemistry, 11, 2171−2178. 10.3762/bjoc.11.235
Kriisa, Marie; Sinijärv, Hedi; Vaasa, Angela; Enkvist, Erki; Kostenko, Sergiy; Moens, Ugo; Uri, Asko (2015). Inhibition of CREB Phosphorylation by Conjugates of Adenosine Analogues and Arginine-Rich Peptides, Inhibitors of PKA Catalytic Subunit. ChemBioChem, 16 (2), 312−319. 10.1002/cbic.201402526
Valgepea, K.; Peebo, K.; Adamberg, K.; Vilu, R. (2015). Lean-proteome strains – next step in metabolic engineering. Frontiers in Bioengineering and Biotechnology, 3, #11. 10.3389/fbioe.2015.00011
Adamberg, Kaarel; Tomson, Katrin; Talve, Tiina; Pudova, Ksenia; Puurand, Marju; Visnapuu, Triinu; Alamäe, Tiina; Adamberg, Signe (2015). Levan Enhances Associated Growth of Bacteroides, Escherichia, Streptococcus and Faecalibacterium in Fecal Microbiota. PLoS ONE, 10 (12), e0144042. 10.1371/journal.pone.0144042
Stulova, I.; Kabanova, N.; Kriščiunaite, T.; Adamberg, K.; Laht, T.-M.; Vilu, R. (2015). Microcalorimetric study of the growth of Streptococcus thermophilus in renneted milk. Frontiers in Microbiology, 6, #79. 10.3389/fmicb.2015.00079
Peebo, K.; Valgepea, K.; Maser, A.; Nahku, R.; Adamberg, K.; Vilu, R. (2015). Proteome reallocation in Escherichia coli with increasing specific growth rate. Molecular BioSystems, 11 (4), 1184−1193. 10.1039/C4MB00721B
Ahelik, Ave; Mändar, Reet; Korrovits, Paul; Karits, Peeter; Talving, Elle; Rosenstein, Karin; Jaagura, Madis; Salumets, Andres; Kullisaar, Tiiu. (2015). Systemic oxidative stress could predict assisted reproductive technique outcome. Journal of Assisted Reproduction and Genetics, 32 (5), 699−704. 10.1007/s10815-015-0466-6
Kazantseva, J.; Tints, K.; Neuman, T.; Palm, K. (2015). TAF4 controls differentiation of human neural progenitor cells through hTAF4-TAFH activity. Journal of Molecular Neuroscience, 55 (1), 160−166. 10.1007/s12031-014-0295-6
Wightman, G.; Emery, F.; Austin, C.; Andersson, I.; Harcus, L.; Arju, G.; Steven, C. (2015). The interaction of fingermark deposits on metal surfaces and potential ways for visualisation. Forensic Science International, 249, 241−254. 10.1016/j.forsciint.2015.01.035
Mazina, Olga; Allikalt, Anni; Heinloo, Annika; Reinart-Okugbeni, Reet; Kopanchuk, Sergei; Rinken, Ago (2015). cAMP Assay for GPCR Ligand Characterization: Application of BacMam Expression System. Methods in molecular biology, 1272, 65−77. 10.1007/978-1-4939-2336-6_5
2014
Põldvere, A.; Lepasalu, L.; Tänavots, A.; Olt, J.; Sannik, U.; Sats, A.; Saar, R.; Martinson, R.; Poikalainen, V. (2014). An alternative method for meat shear energy estimation during ageing. Agronomy Research, 12 (3), 793−800.
Kütt, M-L.; Stagsted, J. (2014). Caseins from bovine colostrum and milk strongly bind piscidin-1, an antimicrobial peptide from fish. International Journal of Biological Macromolecules, 70, 364−372. 10.1016/j.ijbiomac.2014.06.063
Kivima, E.; Seiman, A.; Pall, R.; Sarapuu, E.; Martverk, K.; Laos, K. (2014). Characterization of Estonian honeys by botanical origin. Proceedings of the Estonian Academy of Sciences, 63 (2), 183−192. 10.3176/proc.2014.2.08
Hälvin, K., Nisamedtinov, I., Paalme, T. (2014). Comparison of different extraction methods to determine free and bound forms of B-group vitamins in quinoa. Analytical and Bioanalytical Chemistry, 406 (28), 7355−7366. 10.1007/s00216-014-8122-z
Peebo, K.; Valgepea, K.; Nahku, R.; Riis, G.; Õun, M.; Adamberg, K.; Vilu, R. (2014). Coordinated activation of PTA-ACS and TCA cycles strongly reduces overflow metabolism of acetate in Escherichia coli. Applied Microbiology and Biotechnology, 98 (11), 5131−5143. 10.1007/s00253-014-5613-y
Koppel, K.; Chambers, E. IV; Vázquez-Araújoa, L.; Timberg, L.; Carbonell-Barrachinad, Á. A.; Suwonsichone, S. (2014). Cross-country comparison of pomegranate juice acceptance in Estonia, Spain, Thailand, and United States. Food Quality and Preference, 31, 116−123. 10.1016/j.foodqual.2013.03.009
Adamberg, Signe; Tomson, Katrin; Vija, Heiki; Puurand, Marju; Kabanova, Natalja; Visnapuu, Triinu; Jõgi, Eerik; Alamäe, Tiina; Adamberg, Kaarel (2014). Degradation of fructans and production of propionic acid by Bacteroides thetaiotaomicron are enhanced by the shortage of amino acids. Frontiers in Nutrition, 1 (21), 1−10. 10.3389/fnut.2014.00021
Orro, Kadri; Smirnova, Olga; Arshavskaja, Jelena; Salk, Kristiina; Meikas, Anne; Pihelgas, Susan; Rumvolt, Reet; Kingo, Külli; Kazarjan, Aram; Neuman, Toomas; Spee, Pieter (2014). Development of TAP, a non-invasive test for qualitative and quantitative measurements of biomarkers from the skin surface. Biomarker Research, 2 (20), #20. 10.1186/2050-7771-2-20
Kazantseva, J.; Palm, K. (2014). Diversity in TAF proteomics: consequences for cellular differentiation and migration. International Journal of Molecular Sciences, 15 (9), 16680−16697. 10.3390/ijms150916680
Bessmeltseva, M.; Viiard, E.; Simm, J.; Paalme, T.; Sarand, I. (2014). Evolution of Bacterial Consortia in Spontaneously Started Rye Sourdoughs during Two Months of Daily Propagation. PLoS ONE, 9 (4), e95449. 10.1371/journal.pone.0095449
Kobrin, E-G.; Lees, H.; Fomitšenko, M.; Kubáň, P.; Kaljurand, M. (2014). Fingerprinting postblast explosive residues by portable capillary electrophoresis with contactless conductivity detection. Electrophoresis, 35 (8), 1165−1172. 10.1002/elps.201300380
Seras-Franzoso, J; Peebo, K; García-Fruitós, E; Vazquez, E; Rinas, U; Villaverde, A (2014). Improving protein delivery of fibroblast growth factor-2 from bacterial inclusion bodies used as cell culture substrates. Acta Biomaterialia, 10 (3), 1354−1359. 10.1016/j.actbio.2013.12.021
Pitk, P.; Kaparaju, P.; Palatsi, J.; Belen, F.; Vilu, R. (2014). Mesophilic co-digestion of dairy manure and lipid rich solid slaughterhouse wastes: process efficiency, limitations and floating granules formation. Bioresource Technology, 166, 168−177. 10.1016/j.biortech.2014.05.033
Erm, S.; Adamberg; K.; Vilu, R. (2014). Multiplying steady-state culture in multi-reactor system. Bioprocess and Biosystems Engineering, 37 (11), 2361−2370. 10.1007/s00449-014-1214-5
Aller, K.; Adamberg, K.; Timarova, V.; Seiman, A.; Feštšenko, D.; Vilu, R. (2014). Nutritional requirements and media development for Lactococcus lactis IL1403. Applied Microbiology and Biotechnology, 98 (13), 5871−5881. 10.1007/s00253-014-5641-7
Lahtvee, Petri-Jaan; Seiman, Andrus; Arike, Liisa; Adamberg, Kaarel; Vilu, Raivo (2014). Protein turnover forms one of the highest maintenance costs in Lactococcus lactis. Microbiology-SGM, 160 (7), 1501−1512. 10.1099/mic.0.078089-0
Pink, A.; Kallastu, A.; Turkina, M.; Skolnaja, M.; Kogerman, P.; Päll, T.; Valkna, A. (2014). Purification, Characterization and Plasma Half-Life of PEGylated Soluble Recombinant Non-HA-Binding CD44. BioDrugs, 28 (4), 393−402. 10.1007/s40259-014-0089-y
Timberg, L.; Koppel, K.; Kuldjärv, R.; Chambers IV, E.; Soontrunnarudrungsr, A.; Suwonsichon, S.; Paalme, T. (2014). Seasoned Sprat Products Acceptance in Estonia and in Thailand. Journal of Aquatic Food Product Technology, 23 (6), 552−566. 10.1080/10498850.2012.735748
Abner, K.; Aaviksaar, T.; Adamberg, K.; Vilu, R. (2014). Single-cell model of prokaryotic cell cycle. Journal of Theoretical Biology, 341, 78−87. 10.1016/j.jtbi.2013.09.035
Arike, Liisa; Peil, Lauri (2014). Spectral counting label-free proteomics. Methods in molecular biology (Clifton, N.J.), 1156, 213−222 10.1007/978-1-4939-0685-7_14
Timberg, L.; Koppel, K.; Kuldjärv, R.; Paalme, T. (2014). Spice-cured sprat ripening and sensory properties development. Journal of Aquatic Food Product Technology, 23 (2), 129−145. 10.1080/10498850.2012.700003
Adamberg, S.; Sumeri, I.; Uusna, R.; Ambalam, P.; Kondepudi, K. K.; Adamberg, K.; Wadström, T.; Ljungh, Å. (2014). Survival and synergistic growth of mixed cultures of bifidobacteria and lactobacilli combined with prebiotic oligosaccharides in a gastrointestinal tract simulator. Microbial Ecology in Health and Disease, 25, 1−9. 10.3402/mehd.v25.23062
Pedastsaar, P.; Vaher, M.; Helmja, K.; Kulp, M.;Kaljurand, M.; Karp, K.; Raal, A.; Karathanos, V.; Püssa, T. (2014). The Chemical Composition of Red Wines made from Hybrid Grape and Common Crape. Proceedings of the Estonian Academy of Sciences, 63 (4), 444−453.
Klesment, T.; Stekolštšikova, J.; Laos, K. (2014). The influence of guar gum/furcellaran and guar gum/carrageenan stabilizer systems on the rheological and sensorial properties of ice cream during storage. Proceedings of the Estonian Academy of Sciences, 63 (2), 193−198. 10.3176/proc.2014.2.09
Paalme, T.; Kevvai, K.; Vilbaste, A.; Haelvin, K.; Nisamedtinov, I. (2014). Uptake and accumulation of B-group vitamers in Saccharomyces cerevisiae in ethanol-stat fed-batch culture. World Journal of Microbiology and Biotechnology, 30 (9), 2351−2359. 10.1007/s11274-014-1660-x
Kevvai, K.; Kütt, M.-L.; Nisamedtinov, I.; Paalme, T. (2014). Utilization of N-15-labelled yeast hydrolysate in Lactococcus lactis IL1403 culture indicates co-consumption of peptide-bound and free amino acids with simultaneous efflux of free amino acids. Antonie van Leeuwenhoek, 105 (3), 511−522. 10.1007/s10482-013-0103-2
2013
Vene, K.; Seisonen, S.; Koppel, K.; Leitner, E.; Paalme, T. (2013). A Method for GC-Olfactometry Panel Training. Chemosensory Perception, 6 (4), 179−189. 10.1007/s12078-013-9156-x
Seras-Franzoso, J; Peebo, K; Luis Corchero, J; Tsimbouri, PM; Unzueta, U; Rinas, U; Dalby, MJ; Vazquez, E; García-Fruitós, E; Villaverde, A (2013). A nanostructured bacterial bioscaffold for the sustained bottom-up delivery of protein drugs. Nanomedicine, 8 (10), 1587−1599. 10.2217/NNM.12.188
Kazantseva, J.; Kivil, A.; Tints, K.; Kazantseva, A.; Neuman, T.; Palm, K. (2013). Alternative splicing targeting the hTAF4-TAFH domain of TAF4 represses proliferation and accelerates chondrogenic differentiation of human mesenchymal stem cells. PLoS ONE, 8 (10), e74799. 10.1371/journal.pone.0074799
Kauts, M.-L.; Pihelgas, S.; Orro, K.; Neuman, T.; Piirsoo, A. (2013). CCL5/CCR1 axis regulates multipotency of human adipose tissue derived stromal cells. Stem Cell Research, 10 (2), 166−178. 10.1016/j.scr.2012.11.004
Pitk, P.; Palatsi, J.; Affes, R.; Kaparaju, P.; Vilu, R. (2013). Co-digestion of sewage sludge and sterilized solid slaughterhouse waste: methane production efficiency and process limitations. Bioresource Technology, 134, 227−232. 10.1016/j.biortech.2013.02.029
Hälvin, K.; Paalme, T.; Nisamedtinov, I. (2013). Comparison of different extraction methods for simultaneous determination of B-complex vitamins in nutritional yeast using LC/MS-TOF and stable isotope dilution assay. Analytical and Bioanalytical Chemistry, 405 (4), 1213−1222. 10.1007/s00216-012-6538-x
Valgepea, K.; Adamberg, K.; Seiman, A.; Vilu, R. (2013). Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteins. Molecular BioSystems, 9 (9), 2344−2358. 10.1039/c3mb70119k
Viiard, E.; Mihhalevski, A.; Rühka, T.; Paalme, T.; Sarand, I. (2013). Evaluation of the microbial community in industrial rye sourdough upon continuous back-slopping propagation revealed Lactobacillus helveticus as the dominant species. Journal of Applied Microbiology, 114 (2), 404−412. 10.1111/jam.12045
Stulova, I.; Kabanova, N.; Kriščiunaite, T.; Taivosalo, A.; Laht, T.-M.; Vilu, R. (2013). Fermentation of reconstituted milk by Streptococcus thermophilus: Effect of irradiation on skim milk powder. International Dairy Journal, 31 (2), 139−149. 10.1016/j.idairyj.2013.02.004
Akk, Elina; Lõiveke, Heino; Edesi, Liina; Kütt, Mary-Liis; Lauringson, Enn; Kastanje, Veiko. (2013). Formation of the abundance of microfungi on the barley grain grown as pure and mixed crops in Central and North Estonia. Estonian Journal of Ecology, 62 (4), 265−275. 10.3176/eco.2013.4.03
Pey, J.; Valgepea, K.; Rubio, A.; Beasley, J. E.; Planes, F. J. (2013). Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways. BMC Systems Biology, 7 (1), #134. 10.1186/1752-0509-7-134
Kabanova, N.; Stulova, I.; Vilu, R. (2013). Microcalorimetric study of growth of Lactococcus lactis IL1403 at low glucose concentration in liquids and solid agar gels. Thermochimica Acta, 559, 69−75. 10.1016/j.tca.2013.02.013
Mihhalevski, Anna; Nisamedtinov, Ildar; Hälvin, Kristel; Ošeka, Aleksandra; Paalme, Toomas (2013). Stability of B-complex vitamins and dietary fiber during rye sourdough bread production. Journal of Cereal Science, 57 (1), 30−38. 10.1016/j.jcs.2012.09.007
Taler-Verčič, A.; Kirsipuu, T.; Friedemann, M.; Noormägi, A.; Polajnar, M.; Smirnova, J.; Znidarič, MT.; Zganec, M.; Skarabot, M.; Vilfan, A.; Staniforth, RA.; Palumaa, P.; Zerovnik, E. (2013). The role of initial oligomers in amyloid fibril formation by human stefin B. International Journal of Molecular Sciences, 14 (9), 18362−18384. 10.3390/ijms140918362
Tatkiewicz, Witold I.; Seras-Franzoso, Joaquin; Garcia-Fruitos, Elena; Vazquez, Esther; Ventosa, Nora; Peebo, Karl; Ratera, Imma; Villaverde, Antonio; Veciana, Jaume (2013). Two-dimensional microscale engineering of protein-based nanoparticles for cell guidance. ACS Nano, 7 (6), 4774−4784. 10.1021/nn400907f
Sannik, U.; Reede, T.; Lepasalu, L.; Olt, J.; Karus, A.; Põldvere, A.; Soidla, R.; Veri, K.; Poikalainen, V. (2013). Utilization of animal by-products and waste generated in Estonia. Agronomy Research, 11 (1), 255−260.
2012
Kubáň, P.; Kobrin, E.-G.; Kaljurand, M. (2012). Capillary electrophoresis – A new tool for ionic analysis of exhaled breath condensate. Journal of Chromatography A, 1267 (7), 239−245. 10.1016/j.chroma.2012.06.085
Vaher, M.; Helmja, K.; Käsper, A.; Kurasin, M.; Väljamäe, P.; Kudrjasova, M.; Koel, M.; Kaljurand, M. (2012). Capillary electrophoretic monitoring of hydrothermal pre-treatment and enzymatic hydrolysis of willow: comparison with HPLC and NMR. Catalysis Today, 196 (1), 34−41. 10.1016/j.cattod.2012.02.047
Arike, L.; Valgepea, K.; Peil, L.; Nahku, R.; Adamberg, K.; Vilu, R. (2012). Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli. Journal of Proteomics, 75 (17), 5437−5448. 10.1016/j.jprot.2012.06.020
Kriščiunaite, T.; Stulova, I.; Taivosalo, A.; Laht, T.-M.; Vilu, R. (2012). Composition and renneting properties of raw bulk milk in Estonia. International Dairy Journal, 23 (1), 45−52. 10.1016/j.idairyj.2011.09.013
Adamberg, K.; Seiman, A.; Vilu, R. (2012). Increased Biomass Yield of Lactococcus lactis by Reduced Overconsumption of Amino Acids and Increased Catalytic Activities of Enzymes. PLoS ONE, 7 (10), e48223. 10.1371/journal.pone.0048223
Pitk, P.; Kaparaju, P.; Vilu, R. (2012). Methane potential of sterilized solid slaughterhouse wastes. Bioresource Technology, 116, 42−46. 10.1016/j.biortech.2012.04.038
Kabanova, N.; Stulova, I.; Vilu, R. (2012). Microcalorimetric study of the growth of bacterial colonies of Lactococcus lactis IL1403 in agar gels. Food Microbiology, 29 (1), 67−79. 10.1016/j.fm.2011.08.018
Turks, M.; Rijkure, I.; Belyakov, S.; Zicāne, D.; Kumpiņš, V.; Bizdēna, Ē.; Meikas, A.; Valkna, A. (2012). On differences between racemic and enantiomerically pure forms of aziridine-2-carboxamide. Chemistry of Heterocyclic Compounds, 48 (6), 928−935. 10.1007/s10593-012-1067-2
Gavrilova, O.; Vilu, R. (2012). Production-based and consumption-based national greenhouse gas inventories: An implication for Estonia. Ecological Economics, 75, 161−173. 10.1016/j.ecolecon.2012.01.020
Mihhalevski, Anna; Heinmaa, Ivo; Traksmaa, Rainer; Pehk, Tõnis; Mere, Arvo; Paalme, Toomas (2012). Structural changes of starch during baking and staling of rye bread. Journal of Agricultural and Food Chemistry, 60 (34), 8492−8500. 10.1021/jf3021877
Sumeri, I.; Adamberg, S.; Uusna, R.; Sarand, I.; Paalme, T. (2012). Survival of cheese bacteria in a gastrointestinal tract simulator. International Dairy Journal, 25 (1), 36−41. 10.1016/j.idairyj.2011.12.016
Lints, T. (2012). The essentials of defining adaptation. IEEE Aerospace and Electronic Systems Magazine, 27 (1), 37−41. 10.1109/MAES.2012.6145439
Orumets, Kerti; Kevvai, Kaspar; Nisamedtinov, I; Tamm, T; Paalme, T. (2012). YAP1 over‐expression in Saccharomyces cerevisiae enhances glutathione accumulation at its biosynthesis and substrate availability levels. Biotechnology Journal, 7 (4), 566−568. 10.1002/biot.201100363
2011
Kaseleht, K.; Paalme, T.; Mihhalevski, A.; Sarand, I. (2011). Analysis of volatile compounds produced by different species of lactobacilli in rye sourdough using multiple headspace extraction. International Journal of Food Science Technology, 46 (9), 1940−1946. 10.1111/j.1365-2621.2011.02705.x
Valgepea, K.; Adamberg, K.; Vilu, R. (2011). Decrease of energy spilling in Escherichia coli continuous cultures with rising specific growth rate and carbon wasting. BMC Systems Biology, 5, #106. 10.1186/1752-0509-5-106
Kaseleht, K.; Leitner, E.; Paalme, T. (2011). Determining Aroma-active Compounds in Kama Flour Using SPME-GC/MS and GC-Olfactometry. Flavour and Fragrance Journal, 26 (2), 122−128. 10.1002/ffj.2032
Koppel, K.; Chambers, E. IV; Chambers, D.H. (2011). Flavour and Acceptance of Estonian Cheeses. Agronomy Research, 9 (2), 409−414.
Mihhalevski, A.; Sarand, I.; Viiard, E.; Salumets, A.; Paalme, T. (2011). Growth characterization of individual rye sourdough bacteria by isothermal microcalorimetry. Journal of Applied Microbiology, 110 (2), 529−540. 10.1111/j.1365-2672.2010.04904.x
Vázquez-Araújo, L., Koppel, K., Chambers, E. IV, Adhikari, K., Carbonell-Barrachina, A. (2011). Instrumental and Sensory Aroma Profile of Pomegranate Juices from the USA: Differences between Fresh Juice and Commercial Juices. Flavour and Fragrance Journal, 26 (2), 129−138. 10.1002/ffj.2035
Nisamedtinov, I.; Kevvai, K.; Orumets, K.; Arike, L.; Sarand, I.; Korhola, M.; Paalme, T. (2011). Metabolic changes underlying the higher accumulation of glutathione in Saccharomyces cerevisiae mutants. Applied Microbiology and Biotechnology, 89 (4), 1029−1037. 10.1007/s00253-010-2946-z
Lahtvee, P.-J.; Adamberg, K.; Arike, L.; Nahku, R.; Aller, K.; Vilu, R. (2011). Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth rates. Microbial Cell Factories, 10, #12. 10.1186/1475-2859-10-12
Koppel, K.; Timberg, L.; Salumets, A.; Paalme, T. (2011). Possibility for a strawberry jam sensory standard. Journal of Sensory Studies, 26 (1), 71−80. 10.1111/j.1745-459X.2010.00323.x
Enkvist, E.; Vaasa, A.; Kasari, M.; Kriisa, M.; Ivan, T.; Ligi, K.; Raidaru, G.; Uri, A. (2011). Protein-Induced Long Lifetime Luminescence of Nonmetal Probes. ACS Chemical Biology, 6 (10), 1052−1062. 10.1021/cb200120v
Kaseleht, K., Paalme, T., Nisamedtinov, I. (2011). Quantitative Analysis of Acetaldehyde in Foods Consumed by Children using SPME/GC-MS(Tof), On-fiber Derivatization and Deuterated Acetaldehyde as an Internal Standard. Agronomy Research, 9 (2), 395−401.
Timberg, L.; Koppel, K.; Kuldjärv, R.; Paalme, T. (2011). Rainbow trout composition and fatty acid content in Estonia. Agronomy Research, 9 (2), 495−500.
Timberg, L.; Koppel, K.; Kuldjärv, R.; Paalme, T. (2011). Sensory and chemical properties of Baltic sprat (Sprattus sprattus balticus) and Baltic herring (Clupea harengus membras) in different catching seasons. Agronomy Research, 9 (2), 489−494.
Nahku, R.; Peebo, K.; Valgepea, K.; Barrick, J. E.; Adamberg, K.; Vilu, R. (2011). Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture. Microbiology-SGM, 157 (9), 2604−2610. 10.1099/mic.0.050658-0
Laos, K.; Kirs, E.; Pall, R.; Martverk, K. (2011). The crystallization behaviour of Estonian honeys. Agronomy Research, 9 (2), 427−432.
Kriščiunaite, T.; Stulova, I.; Kabanova, N.; Laht, T.-M.; Vilu, R. (2011). The effect of hydrogen peroxide on the growth of thermophilic lactic starter and acid gelation of UHT milk. International Dairy Journal, 21 (4), 239−246. 10.1016/j.idairyj.2010.11.012
Stulova, I.; Kabanova, N.; Kriščiunaite, T.; Laht, T.-M.; Vilu, R. (2011). The effect of milk heat treatment on the growth characteristics of lactic acid bacteria. Agronomy Research, 9 (2), 473−478.
Klesment, T.; Stekolštšikova, J.; Laos, K. (2011). The influence of hydrocolloids on storage quality of 10% dairy fat ice cream. Agronomy Research, 9 (2), 403−408.
Helmja, K.; Vaher, M.; Püssa, T.; Orav, A.; Viitak, A.; Levandi, T.; Kaljurand, M. (2011). Variation in the composition of the essential oils, phenolic compounds and mineral elements of Hypericum perforatum L. growing in Estonia. Natural Product Research, 25 (5), 496−510. 10.1080/14786411003792165
2010
Gavrilova, O.; Vilu, R.; Vallner, L. (2010). A life cycle environmental impact assessment of oil shale produced and consumed in Estonia. Resources, Conservation Recycling, 55 (2), 232−245. 10.1016/j.resconrec.2010.09.013
Koppel, K., Chambers, E. IV (2010). Development and application of a lexicon to describe the flavor of pomegranate juice. Journal of Sensory Studies, 25 (6), 819−837. 10.1111/j.1745-459X.2010.00307.x
Sumeri, I.; Arike, L.; Stekolštšikova, J.; Uusna, R.; Adamberg, S. Adamberg, K.; Paalme, T. (2010). Effect of stress pretreatment on survival of probiotic bacteria in gastrointestinal tract simulator. Applied Microbiology and Biotechnology, 86 (6), 1925−1931. 10.1007/s00253-009-2429-2
Schmitz, A.; Thormann, W.; Moessner, L.; Theurillat, R.; Helmja, K.; Mevissen, M. (2010). Enantioselective CE analysis of hepatic ketamine metabolism in different species in vitro. Electrophoresis, 31, 1506−1516. 10.1002/elps.200900703
Nisamedtinov, I.; Kevvai, K.; Orumets, K.; Rautio, J.; Paalme, T. (2010). Glutathione accumulation in ethanol-stat fed-batch culture of Saccharomyces cerevisiae with a switch to cysteine feeding. Applied Microbiology and Biotechnology, 87 (1), 175−183. 10.1007/s00253-010-2502-x
Arike, L.; Nahku, R.; Borissova, M.; Adamberg, K.; Vilu, R. (2010). Identification and relative quantification of proteins in Escherichia coli proteome by "up-front" collision-induced dissociation. European journal of mass spectrometry, 16 (2), 227−235. 10.1255/ejms.1068
Skerget, K.; Taler-Vercic, A.; Bavdek, A.; Hodnik, V.; Ceru, S.; Tusek-Znidaric, M.; Kumm, T.; Pitsi, D.; Pompe-Novak, M.; Palumaa, P.; Soriano, S.; Kopitar-Jerala, N.; Turk, V.; Anderluh, G.; Zerovnik, E. (2010). Interaction between oligomers of stefin B and amyloid-beta in vitro and in cells. Journal of Biological Chemistry, 285 (5), 3201−3210. 10.1074/jbc.M109.024620
Stulova, I.; Adamberg, S.; Krisciunaite, T.; Kampura, M.; Blank, L.; Laht, T.-M. (2010). Microbiological quality of raw milk produced in Estonia. Letters in Applied Microbiology, 51 (6), 683−690. 10.1111/j.1472-765X.2010.02951.x
Vaher, M.; Matso, K.; Levandi, T.; Helmja, K.; Kaljurand, M. (2010). Phenolic compounds and antioxidant activity of bran, flour and whole grain of different wheat varieties. Procedia Chemistry, 2, 76−82.
Nahku, R.; Valgepea, K.; Lahtvee, P.-J.; Erm, S.; Abner, K.; Adamberg, K.; Vilu, R. (2010). Specific growth rate dependent transcriptome profiling of Escherichia coli K12 MG1655 in accelerostat cultures. Journal of Biotechnology, 145 (1), 60−65. 10.1016/j.jbiotec.2009.10.007
Valgepea, K.; Adamberg, K.; Nahku, R.; Lahtvee, P.-J.; Arike, L.; Vilu, R. (2010). Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase. BMC Systems Biology, 4, #166. 10.1186/1752-0509-4-166
Spitsmeister, M.; Adamberg, K.; Vilu, R. (2010). UPLC/MS based method for quantitative determination of fatty acid composition in Gram-negative and Gram-positive bacteria. Journal of Microbiological Methods, 82 (3), 288−295. 10.1016/j.mimet.2010.07.006
2009
Helmja, K.; Vaher, M.; Püssa, T.; Kaljurand, M. (2009). Analysis of the stable free radical scavenging capability of artificial polyphenol mixtures and plant extracts by capillary electrophoresis and liquid chromatography-diode array detection-tandem mass spectrometry. Journal of Chromatography A, 1216 (12), 2417−2423.
Riid, A.; Preden, J.; Pahtma, R.; Serg, R.; Lints, T. (2009). Automatic Code Generation for Embedded Systems from High-Level Models. Electronics and Electrical Engineering, 95 (7), 33−36.
Enkvist, E.; Kriisa, M.; Roben, M.; Kadak, G.; Raidaru, G.; Uri, A. (2009). Effect of the structure of adenosine mimic of bisubstrate-analog inhibitors on their activity towards basophilic protein kinases. Bioorganic Medicinal Chemistry Letters, 21 (1), 6098−6101. 10.1016/j.bmcl.2009.09.026
Helmja, K.; Borissova, M.; Knjazeva, T.; Jaanus, M.; Muinasmaa, U.; Kaljurand, M.; Vaher, M. (2009). Fraction collection in capillary electrophoresis for various stand-alone mass spectrometers. Journal of Chromatography A, 1216 (17), 3666−3673.
Kabanova, N.; Kazarjan, A.; Stulova, I.; Vilu, R. (2009). Microcalorimetric study of growth of Lactococcus lactis IL1403 at different glucose concentrations in broth. Thermochimica Acta, 496 (1-2), 87−92. 10.1016/j.tca.2009.07.003
Kazantseva, A.; Sepp, M.; Kazantseva, J.; Sadam, H.; Pruunsild, P.; Timmusk, T.; Neuman, T.; Palm, K. (2009). N-terminally truncated BAF57 isoforms contribute to the diversity of SWI/SNF complexes in neurons. Journal of Neurochemistry, 109 (3), 807−818. 10.1111/j.1471-4159.2009.06005.x
Adamberg, K.; Lahtvee, P.-J.; Valgepea, K.; Abner, K.; Vilu, R. (2009). Quasi steady state growth of Lactococcus lactis in glucose-limited acceleration stat (A-stat) cultures. Antonie van Leeuwenhoek, 95 (3), 219−226. 10.1007/s10482-009-9305-z
Lahtvee, P.-J.; Valgepea, K.; Nahku, R.; Abner, K.; Adamberg, K.; Vilu, R. (2009). Steady state growth space study of Lactococcus lactis in D-stat cultures. Antonie van Leeuwenhoek, 96 (4), 487−496 . 10.1007/s10482-009-9363-2
2008
Dugo, Paola; Herrero, Miguel; Giuffrida, Daniele; Kumm, Tiina; Dugo, Giovanni; Mondello, Luigi (2008). Application of Comprehensive Two-Dimensional Liquid Chromatography To Elucidate the Native Carotenoid Composition in Red Orange Essential Oil. Journal of Agricultural and Food Chemistry, 56 (10), 3478−3485. 10.1021/jf800144v
Dugo, Paola; Cacciola, Francesco; Kumm, Tiina; Dugo, Giovanni; Mondello, Luigi (2008). Comprehensive multidimensional liquid chromatography: Theory and applications. Journal of Chromatography A, 1184 (1-2), 353−368. 10.1016/j.chroma.2007.06.074
Dugo, Paola; Herrero, Miguel; Kumm, Tiina; Giuffrida, Daniele; Dugo, Giovanni; Mondello, Luigi (2008). Comprehensive normal-phase x reversed-phase liquid chromatography coupled to photodiode array and mass spectrometry detectors for the analysis of free carotenoids and carotenoid esters from mandarin. Journal of Chromatography A, 1189, 196−206.
Helmja, K.; Vaher, M.; Püssa, T.; Raudsepp, P.; Kaljurand, M. (2008). Evaluation of antioxidative capability of the tomato (Solanum lycopersicum) skin constituents by capillary electrophoresis and high-perfoemance liquid chromatography. Electrophoresis, 3980−3988.
Mondello, Luigi; Herrero, Miguel; Kumm, Tiina; Dugo, Paola; Cortes, Hernan; Dugo, Giovanni (2008). Quantification in Comprehensive Two-Dimensional Liquid Chromatography. Analytical Chemistry, 80 (14), 5418−5424. 10.1021/ac800484y
Sumeri, I.; Arike, L.; Adamberg, K.; Paalme, T. (2008). Single bioreactor gastrointestinal tract simulator for study of survival of probiotic bacteria. Applied Microbiology and Biotechnology, 80 (2), 317−324. 10.1007/s00253-008-1553-8
Nisamedtinov, I.; Lindsey, G. G.; Karreman, R.; Orumets, K.; Koplimaa, M.; Kevvai, K.; Paalme, T. (2008). The response of the yeast Saccharomyces cerevisiae to sudden vs. gradual changes in environmental stress monitored by expression of the stress response protein Hsp12p. FEMS Yeast Research, 8 (6), 829−838. 10.1111/j.1567-1364.2008.00391.x
Dugo, P.; Kumm, T.; Cacciola, F.; Dugo, G.; Mondello, L. (2008). Multidimensional Liquid Chromatographic Separations Applied to the Analysis of Food Samples. Journal of Liquid Chromatography Related Technologies, 31, 1758−1807. 10.1080/10826070802128888
2007
Helmja, K.; Vaher, M.; Püssa, T.; Kamsol, K.; Orav, A.; Kaljurand, M. (2007). Bioactive components of the hop strobilus: Comparison of different extraction methods by capillary electrophoretic and chromatographic methods. Journal of Chromatography A, 1155 (2), 222−229.
Voronova, A.; Kazantseva, J.; Tuuling, M.; Sokolova, N.; Sillard, R.;L Palumaa, P. (2007). Cox17, a copper chaperone for cytochrome c oxidase: Expression, purification and formation of mixed disulfide adducts with thiol reagents. Protein Expression and Purification, 53 (1), 138−144. 10.1016/j.pep.2006.11.014
Kasemets K., Nisamedtinov I., Laht T.-M.,Abner K., Paalme T. (2007). Growth characteristics of Saccharomyces cerevisiae S288C in changing environmental conditions: auxo-accelerostat study. Antonie van Leeuwenhoek, 92 (1), 109−128. 10.1007/s10482-007-9141-y
Voronova, A.; Meyer-Klaucke, W.; Meyer, T.; Rompel, A.; Krebs, B.; Kazantseva, J.; Sillard, R.; Palumaa, P. (2007). Oxidative switches in functioning of mammalian copper chaperone Cox17. Biochemical Journal, 408 (1), 139−148. 10.1042/BJ20070804
2006
Paalme, Toomas; Nisamedtinov, Ildar; Abner, Kristo; Laht, Tiiu-Maie; Drews, Monika; Pehk, Tõnis (2006). Application of 13C-[2]- and 13C-[1,2] acetate in metabolic labelling studies of yeast and insect cells. Antonie van Leeuwenhoek, 89, 443−457. 10.1007/s10482-005-9053-7
Sarmiento, C.; Nigul, L.; Kazantseva, J.; Buschmann, M.; Truve, E. (2006). AtRLI2 is an endogenous suppressor of RNA silencing. Plant Molecular Biology, 61, 153−163. 10.1007/s11103-005-0001-8
Dugo, P.; Kumm, T.; Crupi, M.L.; Cotroneo, A.; Mondello, L. (2006). Comprehensive Two-Dimensional Liquid Chromatography Combined with Mass Spectrometric Detection in the Analyses of Triacylglycerols in Natural Lipidic Matrices. Journal of Chromatography A, 1112, 269−275.
Dugo, Paola; Kumm, Tiina; Fazio, Alessia; Dugo, Giovanni; Mondello, Luigi (2006). Determination of beef tallow in lard through a multidimensional off-line Non Aqueous Reversed Phase/Argentation LC method coupled to Mass Spectrometry. Journal of Separation Science, 29, 567−575.
Dugo, Paola; Škeříková, Veronika; Kumm, Tiina; Trozzi, Alessandra; Jandera, Pavel; Mondello, Luigi (2006). Elucidation of carotenoid patterns in citrus products by means of comprehensive normal phase x reversed phase liquid cromatography. Analytical Chemistry, 78 (22), 7743−7750. 10.1021/ac061290q
Tahkoniemi, H.; Helmja, K.; Menert, A.; Kaljurand, M. (2006). Fermentation reactor coupled with capillary electropherophoresis for on-line bioprocess monitoring. Journal of Pharmaceutical and Biomedical Analysis, 41 (5), 1585−1591. 10.1016/j.jpba.2006.01.042
Meloni, G.; Zovo, K.; Kazantseva, J.; Palumaa, P.; Vasak, M. (2006). Organization and assembly of metal-thiolate clusters in epithelium-specific metallothionein-4. Journal of Biological Chemistry, 281 (21), 14588−14595. 10.1074/jbc.M601724200
Dugo, Paola; Kumm, Tiina; Chiofalo, Biagina; Cotroneo, Antonella; Mondello, Luigi (2006). Separation of triacylglycerols in a complex lipidic matrix by using comprehensive two-dimensional liquid chromatography coupled with atmospheric pressure chemical ionization mass spectrometric detection. Journal of Separation Science, 29 (8), 1146−1154. 10.1002/jssc.200500476
Adamberg, K.; Adamberg, S.; Laht, T.-M.; Ardö, Y.; Paalme, T. (2006). Study of Cheese Associated Lactic Acid Bacteria under Carbohydrate-Limited Conditions Using D-stat Cultivation. Food Biotechnology, 20 (2), 143−160. 10.1080/08905430600709412
2005
2007
Dugo, Paola; Kumm, Tiina; Lo Presti, Maria; Chiofalo, Biagina; Salimei, Elisabetta; Fazio, Alessia; Cotroneo, Antonella; Mondello, Luigi. (2005). Determination of triacylglycerols in donkey milk by using high performance liquid chromatography coupled with atmospheric pressure chemical ionization mass spectrometry. Journal of Separation Science, 28, 1023−1030.
Kilk, K.; El-Andaloussi, S.; Jarver, P.; Meikas, A.; Valkna, A.; Bartfai, T.; Kogerman, P.; Metsis, M.; Langel, U. (2005). Evaluation of transportan 10 in PEI mediated plasmid delivery assay. Journal of Controlled Release, 103 (2), 511−523. 10.1016/j.jconrel.2004.12.006
Adamberg, K.; Antonsson, M.; Vogensen, FK.; Nielsen, EW.; Kask, S.; Moller, PL.; Ardo, Y (2005). Fermentation of carbohydrates from cheese sources by non-starter lactic acid bacteria isolated from semi-hard Danish cheese. International Dairy Journal, 15, 873−882.
2004
2007
Menert, A.; Paalme, V.; Juhkam, J.; Vilu, R (2004). Characterization of sulfate-reducing bacteria in yeast industry waste by microcalorimetry and PCR amplification. Thermochimica Acta, 420, 89−98. 10.1016/j.tca.2003.12.032
Orav, Anne.; Stulova, Irina.; Kailas, Tiiu.; Müürisepp, Mati (2004). Effect of storage on the essential oil composition of Piper nigrum L. fruits of different ripening states. Journal of Agricultural and Food Chemistry, 52 (9), 2582−2586.
2003
Kasemets, K.; Drews, M.; Nisamedtinov, I.; Adamberg, K.; Paalme, T (2003). Modification of A-stat for the characterization of microorganisms. Journal of Microbiological Methods, 55 (1), 187−200.
Kask, S.; Adamberg, K.; Orlowski, A.; Vogensen, FK.; Moller, PL.; Ardo, Y.; Paalme, T (2003). Physiological properties of Lactobacillus paracasei, L. Danicus and L-curvatus strains isolated from Estonian semi-hard cheese. Food Research international, 36, 1037−1046.
Adamberg, K.; Kask, S.; Laht, TM.; Paalme, T (2003). The effect of temperature and ph on the growth of lactic acid bacteria: a ph-auxostat study. International Journal of Food Microbiology, 85, 171−183.
Blonskaja, V.; Menert, A.; Vilu, R (2003). Use of two-stage anaerobic treatment for distillery waste. Advances in Environmental Research, 7 (3), 671−678.
2002
2002
Kulp, Maria; Vassiljeva, Irina; Vilu, Raivo; Kaljurand, Mihkel (2002). Monitoring of the degradation of phenols by Rhodococcus bacteria by using micellar electrokinetic chromatography. Journal of Separation Science, 25, 1129−1135.
Laht, Tiiu-Maie; Kask, Signe; Elias, Priit; Adamberg, Kaarel; Paalme, Toomas (2002). Role of Arginine in the Development of Secondary Microflora in Swiss-Type Cheese. International Dairy Journal, 12 (10), 831−840.
2001
Menert, A.; Liiders, M.; Kurissoo, T.; Vilu, R (2001). Microcalorimetric monitoring of anaerobic digestion processes. Journal of Thermal Analysis and Calorimetry, 64 (1), 281−291.
Ehala, S.; Vassiljeva, I.; Kuldvee, R.; Vilu, R.; Kaljurand, M (2001). On-line coupling of a miniaturized bioreactor with capillary electrophoresis, via a membrane interface, for monitoring the production of organic acids by microorganisms. Fresenius Journal of Analytical Chemistry, 371 (2), 168−173.
2000
Chen, J.; Dagher, SM.; Fisher, CE.; Grunow, W.; Hattan, DG.; Kawamura, Y.; Knaap, AGAC.; Kuznesof, PM.; Larsen, JC.; Meyland, I.; Pascal, G.; Riordan, M.; Walker, R.; Wilson, JD.; Akkelidou, D.; Bellinger, DC.; Bolger, M.; Carrington, C.; Dewailly, E.; DiNovi, M., Eriksen, GS.; Greig, J.; Hecker, EFF.; Herrman, JL.; Hotchkiss, JH.; Madsen, C.; Magos, LPA.; Mattia, A.; Moy, G.; Munro, IC.; Nishikawa, A.; Pennington, JA.; Petersen, B.; Renwick, AG.; Resnik, S.; Schlatter, J.; Sipes, GI.; Speijers, GJA.; Vavasour, E.; Verger, JP.; Vilu, R.; Wallin, H.; Weatherwax, J.; Whitehouse, DB (2000). Evaluation of certain food additives and contaminants. Evaluation of Certain Food Additives and Contaminants, 53rd Report, 896, 1−128.
1999
Rozkov, A.; Vassiljeva, I.; Kurvet, M.; Kahru, A.; Preis, S.; Kharchenko, A.; Krichevskaya, M.; Liiv, M.; Kaard, A.; Vilu, R (1999). Laboratory study of bioremediation of rocket fuel-polluted groundwater. Water Research, 33 (5), 1303−1313.
1998
Kallastu, A.; Hõrak, R.; Kivisaar, M. (1998). Identification and characterization of IS1411, a new insertion sequence which causes transcriptional activation of the phenol degradation genes in Pseudomonas putida. Journal of Bacteriology, 180 (20), 5306−5312.
1997
Rozkov, A.; Kaard, A.; Vilu, R (1997). Biodegradation of dissolved jet fuel in chemostat by a mixed bacterial culture isolated from a heavily polluted site. Biodegradation, 8 (6), 363−369.
Gudima, S.O.; Kazantseva, E.G.; Kostjuk, D.A. (1997). Deoxynucleotide-containing RNAs: a novel class of templates for HIV-I reverse transcriptase. Nucleic Acids Research, 25 (22), 4614−4618.
Paalme, T.; Elken, R.; Vilu, R.; Korhola, M. (1997). Growth efficiency of Saccharomyces cerevisiae on glucose/ethanol media with a smooth change in the dilution rate (A-stat). Enzyme and Microbial Technology, 20 (3), 174−181.
Paalme, T.; Elken, R.; Kahru, A.; Vanatalu, K.; Vilu, R. (1997). The growth rate control in Escherichia coli at near to maximum growth rates: the A-stat approach. Antonie van Leeuwenhoek, 71 (3), 217−230.
1995
Paalme, T.; Kahru, A.; Elken, R.; Vanatalu, K.;Tiisma, K.; Vilu, R. (1995). The Computer- Controlled Continuous Culture of Escherichia coli with Smooth Change of Dilution rate. A-stat. Journal of Microbiological Methods, 24, 145−153.
Drews, M.; Paalme, T.; Vilu, R. (1995). The growth and nutrient utilization of the insect cell line Spodoptera frugiperda Sf9 cells in batch and continuous culture. Journal of Biotechnology, 40 (3), 187−198.
1993
Vanatalu, K.; Paalme, T.; Vilu, R.; Burkhardt, N.; Junemann, R.; May, R.; Ruhl, M.; Wadzack, J.; Nierhaus, K.H. (1993). Large-scale preparation of fully deuterated cell components - ribosomes from Escherichis coli with high biological activity. European Journal of Biochemistry, 216 (1), 315−321.
Sarand, I.; Mae, A.; Vilu, R.; Heinaru, A. (1993). New derivatives of tol plasmid pww0. Journal of General Microbiology, 139, 2379−2385.
1990
Paalme, T.; Tiisma, K.; Kahru, A.; Vanatalu, K; Vilu, R. (1990). Glucose-limited fed-batch cultivation of Escherichia coli with computer-controlled fixed growth rate. Biotechnology and Bioengineering, 35, 312−319.
Kahru, A.; Vilu, R. (1990). The role of the adenine nucleotides in the regulation of bacterial energy metabolism: theoretical problems and experimental pitfalls. Microbios. 62, 83−92.
1989
Schafer, S.; Paalme, T.; Vilu, R.; Fuchs, G. (1989). C-13-NMR STUDY OF ACETATE ASSIMILATION IN THERMOPROTEUS-NEUTROPHILUS. European Journal of Biochemistry, 186 (3), 695−700.
1988
Kahru, A.; Vilu, R. (1988). Use of the luciferin-luciferase assay of ATP for measuring the bacterial growth: application to Escherichia coli. Acta Biotechnologica, 8, 93−98.
1987
Kahru, A.; Paalme, T.; Vilu, R. (1987). Effect of temperature on the ATP pool and adenylate energy charge of Escherichia coli. FEMS Microbiology Letters, 41 (3), 305−308.
1983
Kahru, A.; Vilu, R. (1983). On characterization of the growth of Escherichia coli in batch culture. Archives of Microbiology, 135 (1), 12−15.
1982
Kahru, A.; Liiders, M.; Vanatalu, K.; Vilu, R. (1982). Adenylate energy charge during batch culture of Thermoactinomyces vulgaris. Archives of Microbiology, 133 (2), 142−144.
Paalme, T.; Olivson, A.; Vilu, R. (1982). C-13-NMR Study of CO2-Fixation During the Heterotrophic Growth in Chlorobium-thiosulfatophilum. Biochimica et Biophysica Acta, 720 (3), 311−319.