TFTAK Scientific Research
Publications by #teamTFTAK
2023
Kapitanov, I.; Raba, G.; Spulak, M.; Vilu, R.; Karpichev, Y.; Gathergood, N.
Design of Sustainable Ionic Liquids Based on L-Phenylalanine and L-Alanine Dipeptides: Synthesis, Toxicity and Biodegradation Studies. 10.1016/j.molliq.2023.121285
Kallastu, A.; Malv, E.; Aro, V.; Meikas, A.; Vendelin, M.; Kattel, A.; Nahku, R.; Kazantseva, K. Absolute quantification of viable bacteria abundances in food by next-generation sequencing: Quantitative NGS of viable microbes. 10.1016/j.crfs.2023.100443
Reidzane, S.; Gramatina, I.; Galoburda, R.; Komasilovs, V.; Zacepins, A.; Bljahhina, A.; Kince, T.; Traksmaa, A.; Klava, D. The changes of fructan, glucan and mannan in the technological process of the wholegrain wheat bead fermented with the spontaneous sourdough of hull-less barley. 10.3390/foods12010155
Ye Tian, Ying Zhou, Marie Kriisa, Maret Anderson, Oskar Laaksonen, Mary-Liis Kütt, Maike Föste, Małgorzata Korzeniowska, Baoru Yang. Effects of fermentation and enzymatic treatment on phenolic compounds and soluble proteins in oil press cakes of canola (Brassica napus). 10.1016/j.foodchem.2022.135339
Natalja Part, Jekaterina Kazantseva, Sirli Rosenvald, Aili Kallastu, Helen Vaikma, Tiina Kriščiunaite, Dmitri Pismennõi, Ene Viiard. Microbiological, chemical, and sensorial characterisation of commercially available plant-based yoghurt alternatives. 10.1016/j.fufo.2022.100212
Anna Kattel, Indrek Morell, Valter Aro, Petri-Jaan Lahtvee, Raivo Vilu, Arvi Jõers, Ranno Nahku
Detailed analysis of metabolism reveals growth-rate-promoting interactions between Anaerostipes caccae and Bacteroides spp. 10.1016/j.anaerobe.2022.102680
Xia, X.; Arju, G.; Taivosalo, A.; Lints, T.; Kriščiunaite, T.; Vilu, R.; Corrigan, B.M. ; Gai, N.; Fenelon, M.A.; Tobin, J.T.; Kilcawley, K.; Kelly, A.L.; McSweeney, P.L.H.; Sheehan, J.J. Effect of β-casein reduction and high heat treatment of micellar casein concentrate on proteolysis, texture and the volatile profile of resultant Emmental cheese during ripening. 10.1016/j.idairyj.2022.105540
2022
Vaikma, H.; Metsoja, G.; Bljahhina, A.; Rosenvald, S. Individual differences in sensitivity to bitterness focusing on oat and pea preparations. 10.1016/j.fufo.2022.100206
Eha, Kairit; Kaleda, Aleksei; Menert, Anne; Laos, Katrin. Water Sorption Behaviour of Commercial Furcellaran. 10.1016/j.heliyon.2022.e11056
Leppik, K.; Lang, H.; Kuhtinskaja, M.; Rosenvald, S.The Use of Lipid Oxidation Indicators to Assess the Quality Deterioration of Potato Chips during Accelerated Shelf-Life Tests. 10.36400/J.Food.Stab.5.2.2022-0015
Joncer Naibaho, Aneta Wojdyło, Małgorzata Korzeniowska, Oskar Laaksonen, Maike Föste, Mary-LiisKütt, BaoruYang.
Antioxidant activities and polyphenolic identification by UPLC-MS/MS of autoclaved brewers' spent grain. 10.1016/j.lwt.2022.113612
Kaarel Erik Hunt, Alfonso T. García-Sosa, Tatsiana Shalima, Uko Maran, Raivo Vilub and Tõnis Kanger
Deacetylation of HMO building blocks using immobilized CAL-B to synthesize 6'-GL, an HMO. 10.1039/D2OB00550F
Andreson, M.; Kazantseva, J.; Kuldjärv, R.; Malv, E.; Vaikma, H.; Kaleda, A.; Kütt, M-L.; Vilu, R.
Characterisation of chemical, microbial and sensory profiles of commercial kombuchas. 10.1016/j.ijfoodmicro.2022.109715
Krauter, V.; Leppik, K.; Bauer, A.-S.; Milousi, M.; Dörnyei, K. R.; Ganczewski, G.; Krepil, J.; Varzakas, T.
Cereal and Confectionary Packaging: Assessment of Sustainability and Environmental Impact with a Special Focus on Greenhouse Gas Emissions. 10.3390/foods11091347
Kriisa, M.; Taivosalo, A.; Föste, M.; Kütt, M-L.; Viirma, M.; Priidik, R.; Korzeniowska, M.; Tian, Y.; Laaksonen, O.; Yang, B.; Vilu, R. Effect of enzyme‐assisted hydrolysis on brewer's spent grain protein solubilization – peptide composition and sensory properties. 10.1016/j.afres.2022.100108
Ye Tian, Marie Kriisa, Maike Föste, Mary-Liis Kütt, Ying Zhou, Oskar laaksonen, Baoru Yang.
Impact of enzymatic pre-treatment on composition of nutrients and phytochemicals of canola (Brassica napus) oil press residues. 10.1016/j.foodchem.2022.132911
Arju, G.; Berg, H. Y.; Lints, T.; Nisamedtinov, I. Methodology for Analysis of Peptide Consumption by Yeast during Fermentation of Enzymatic Protein Hydrolysate Supplemented Synthetic Medium Using UPLC-IMS-HRMS. 10.3390/fermentation8040145
Sepp, E.; Smidt, I.; Rööp.; Štšepetova, J.; Kõljalg, S.; Mikelsaar, M.; Soidla, I.; Ainsaar, M.; Kolk, H.; Vallas, M.; Jaagura, M.; Mändar, R. Comparative analysis of gut microbiota in centenarians and young people: impact of eating habits and childhood living environment. 10.3389/fcimb.2022.851404
Kärt Leppik, Anna-Sophia Bauer, Victoria Krauter, Ioannis Anestopoulus, Kata Calic, Mihalis Panagiotidis, Maria Sagriopoulou, Theodoras, Varzakas, Ilke Uysal Ünalan, Maria Milousi. Cereal and Confectionary Packaging: Background, Application and Shelf-Life Extension. 10.3390/foods11050697
Kriščiunaite, T; Tanilas, K. Development of LC-MS-ESI-TOF method for quantification of phytates in food using 13C-labelled maize as internal standard. 10.1007/s00216-021-03770-1
Kokina, A.; Tanilas, K.; Ozolina, Z.; Pleiko, K.; Shvirksts, K.; Vamza, I.; Liepins, J. Purine Auxotrophic Starvation Evokes Phenotype Similar to Stationary Phase Cells in Budding Yeast. 10.3390/jof8010029
Madis Jaagura, Natalja Part, Kaarel Adamberg, Jekaterina Kazantseva, Ene Viiard. Consumption of multi-fiber enriched yogurt is associated with increase of bifidobacteria and butyrate producing bacteria in human fecal microbiota. 10.1016/j.jff.2021.104899
Naibaho, J.; Butula, N.; Jonuzi, E.; Korzeniowska, M.; Laaksonen, O.; Föste, M.; Kütt, M-L.; Yang, B.. Potential of brewers’ spent grain in yogurt fermentation and evaluation of its impact in rheological behaviour, consistency, microstructural properties and acidity profile during the refrigerated storage. 10.1016/j.foodhyd.2021.107412
2021
Gasik Michael; Ivanov Roman; Kazantseva Jekaterina; Bilotsky Yevgen; Hussainova Irina (2021). Biomechanical Features of Graphene-Augmented Inorganic Nanofibrous Scaffolds and Their Physical Interaction with Viruses. 2D Materials, 14 (1), 164. 10.3390/ma14010164
Reidzane, S.; Kruma, Z.; Kazantseva, J.; Traksmaa, A.; Klava, D. (2021). Determination of technological parameters and characterization of microbiota of the spontaneous sourdough fermentation of hull-less barley. Foods, 10 (10). 10.3390/foods10102253
Pismennõi, Dmitri; Kiritsenko, Vassili; Marhivka, Jaroslav; Kütt, Mary-Liis; Vilu, Raivo (2021). Development and Optimisation of HILIC-LC-MS Method for Determination of Carbohydrates in Fermentation Samples. Molecules, 26 (12), 3669. 10.3390/molecules26123669
Uppuluri, K.; Szwagierczak, D.; Zaraska, K.; Lazouskaya, M.; Tamm, M. (2021). Fabrication, Potentiometric Characterization, and Application of Screen-Printed RuO2 pH Electrodes for Water Quality Testing. Sensors, 21 (5399). 10.3390/s21165399
Lazouskaya, Maryna; Stulova, Irina; Sõrmus, Aavo; Scheler, Ott; Tiisma, Kalle; Vinter, Toomas; Loov, Roman; Tamm, Martti (2021). Front-face Fluorimeter for the Determination of Cutting Time of Cheese Curd. Foods, 10, 576. 10.3390/foods 10030576
Angelis, D. De; Kaleda, A.; Pasqualone, A.; Vaikma, H.; Squeo, G.; Caponio, F.; Summo, C. (2021). How to Balance the Yield and Protein Content of Air-classified Pulse Flour: the Influence of the Restriction Valve. Chemical Engineering Transactions, 87, 241−246. 10.3303/CET2187041
Laaksonen, Oskar; Kahala, Minna; Marsol-Vall, Alexis; Blasco, Lucia; Järvenpää, Eila; Rosenvald, Sirli; Virtanen, Mikaa; Tarvainen, Marko; Yang, Baoru. (2021). Impact of lactic acid fermentation on sensory and chemical quality of dairy analogues prepared from lupine (Lupinus angustifolius L.) seeds. Food Chemistry, 346, 128852 10.1016/j.foodchem.2020.128852
Eha, Kairit; Pehk, Tõnis; Heinmaa, Ivo; Kaleda, Aleksei; Laos, Katrin (2021). Impact of short-term heat treatment on the structure and functional properties of commercial furcellaran compared to commercial carrageenans. Heliyon, 7, e06640 10.1016/j.heliyon.2021.e06640
Jaagura, Madis; Viiard, Ene; Karu‐Lavits, Kätrin; Adamberg, Kaarel (2021). Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota. MicrobiologyOpen, 10 (3). 10.1002/mbo3.1194
Vaikma, H.; Kaleda, A.; Rosend, J.; Rosenvald, S. (2021). Market mapping of plant-based milk alternatives by using sensory (RATA) and GC analysis. Future Foods, 4. 10.1016/j.fufo.2021.100049
Kazantseva, Jekaterina; Malv, Esther; Kaleda, Aleksei; Kallastu, Aili; Meikas, Anne (2021). Optimisation of sample storage and DNA extraction for human gut microbiota studies. BMC Microbiology, 21, 158. 10.1186/s12866-021-02233-y
Kaleda, A.; Talvistu, K.; Vaikma, H.; Tammik, M.-L.; Rosenvald, S.; Vilu, R. (2021). Physicochemical, textural, and sensorial properties of fibrous meat analogs from oat-pea protein blends extruded at different moistures, temperatures, and screw speeds. Future Foods, 4 (100092). 10.1016/j.fufo.2021.100092
Kivima, E.; Tanilas, K.; Martverk, K.; Rosenvald, S.; Timberg, L.; Laos, K. (2021). The Composition, Physicochemical Properties, Antioxidant Activity, and Sensory Properties of Estonian Honeys. Foods, 10 (3), #511. 10.3390/foods10030511
2020
Maser, A.; Peebo, K.; Vilu, R.; Nahku, R. (2020). Amino acids are key substrates to Escherichia coli BW25113 for achieving high specific growth rate. Research in Microbiology, 171 (5-6), 185−193. 10.1016/j.resmic.2020.02.001
Arju, G.; Taivosalo, A.; Pismennoi, D.; Lints, T.; Vilu, R.; Daneberga, Z.; Vorslova, S.; Renkonen, R.; Joenvaara, S. (2020). Application of the UHPLC-DIA-HRMS Method for Determination of Cheese Peptides. Foods, 9 (8), #979. 10.3390/foods9080979
Karron, E.; Runno-Paurson, E.; Lõiveke, H.; Islamov, B.; Kütt, M.-L.; Talve, T.; Lauringson, E.; Hõrak, H.; Edesi, E.; Niinemets, Ü. (2020). Application of widely used fungicides does not necessarily affect grain yield, and incidence of Fusarium spp. and mycotoxins DON, HT-2 and T-2 in spring barley in northern climates. KVASNY PRUMYSL, 66 (1), 215−223. 10.18832/kp2020.66.215
Witter, Steffi; Arju, Georg; Junusova, Marina; Kuhtinskaja, Maria; Samoson, Ago; Witter, Raiker; Vilu, Raivo (2020). Compound’s Pre-Screening of Withania somnifera, Baccopa monnieri and Centella asiatica Extracts. Journal of Biosciences and Medicines, 8 (9), 80−98. 10.4236/jbm.2020.89007
Kirsipuu, T.; Zadorožnaja, A.; Smirnova, J.; Friedemann, M.; Plitz, T.; Tõugu, V.; Palumaa, P. (2020). Copper(II)-binding equilibria in human blood. Scientific Reports, 10 (1), #5686. 10.1038/s41598-020-62560-4
Jõers, Arvi; Liske, Eliis; Tenson, Tanel (2020). Dividing subpopulation of Escherichia coli in stationary phase. Research in Microbiology, 171 (3-4), 153−157. 10.1016/j.resmic.2020.02.002
Kaleda, Aleksei; Talvistu, Karel; Tamm, Martti; Viirma, Maret; Rosend, Julia; Tanilas, Kristel; Kriisa, Marie; Part, Natalja; Tammik, Mari-Liis (2020). Impact of Fermentation and Phytase Treatment of Pea-Oat Protein Blend on Physicochemical, Sensory, and Nutritional Properties of Extruded Meat Analogs. Foods, 9 (8), 1059. 10.3390/foods9081059
Friedenthal, M.; Eha, K.; Kaleda, A.; Part, N.; Laos, K. (2020). Instability of low-moisture carrageenans as affected by water vapor sorption at moderate storage temperatures. SN Applied Sciences, 2, #243 . 10.1007/s42452-020-2032-9
Arike, Liisa; Seiman, Andrus; van der Post, Sjoerd; Pineiro, Ana M. Rodriguez; Ermund, Anna; Schutte, Andre; Backhed, Fredrik; Johansson, Malin E. V.; Hansson, Gunnar C. (2020). Protein Turnover in Epithelial Cells and Mucus along the Gastrointestinal Tract Is Coordinated by the Spatial Location and Microbiota. Cell Reports, 30 (4), 1077−1091. 10.1016/j.celrep.2019.12.068
Witter, S.; Samoson, A.; Vilu, R.; Witter, R. (2020). Screening of Nutraceuticals and Plant Extracts for Inhibition of Amyloid-beta Fibrillation. Journal of Alzheimer's Disease, 73 (3), 1003−1012. 10.3233/JAD-190758
Kamboj, N.; Kazantseva, J.; Rahmani, R.; Rodríguez, M. A.; Hussainova, I. (2020). Selective laser sintered bio-inspired silicon-wollastonite scaffolds for bone tissue engineering. Materials Science and Engineering C, 116, #111223. 10.1016/j.msec.2020.111223
Štšepetova, J.; Baranova, J.; Simm, J.; Parm, Ü.; Rööp, T.; Sokmann, S.; Korrovits, P.; Jaagura, M.; Rosenstein, K.; Salumets, A.; Mändar, R. (2020). The complex microbiome from native semen to embryo culture environment in human in vitro fertilization procedure. Reproductive Biology and Endocrinology, 18 (1), 1−13. 10.1186/s12958-019-0562-z
Adamberg, K.; Jaagura, M.; Aaspõllu, A.; Nurk, E.; Adamberg, S. (2020). The composition of faecal microbiota is related to the amount and variety of dietary fibres. International Journal of Food Sciences and Nutrition. 10.1080/09637486.2020.1727864
Adamberg, Kaarel; Raba, Grete; Adamberg, Signe (2020). Use of Changestat for Growth Rate Studies of Gut Microbiota. Frontiers in Bioengineering and Biotechnology, 8, ARTN 24. 10.3389/fbioe.2020.00024
Rosend, J.; Kaleda, A.; Kuldjärv, R.; Arju, G.; Nisamedtinov, I. (2020). The effect of apple juice clarification and concentration on cider fermentation and properties of the final product. Foods, 9, 1401. 10.3390/foods9101401
2019
Maser, A.; Peebo, K.; Nahku, R. (2019). Avoiding amino acid depletion in a complex medium results in improved Escherichia coli BW25113 growth. Microbiology, 165 (1), 37−46. 10.1099/mic.0.000742
Gawin, Agnieszka; Peebo, Karl; Hans, Sebastian; Ertesvag, Helga; Irla, Marta; Neubauer, Peter; Brautaset, Trygve (2019). Construction and characterization of broad-host-range reporter plasmid suitable for on-line analysis of bacterial host responses related to recombinant protein production. Microbial Cell Factories, 18, ARTN 80. 10.1186/s12934-019-1128-7
Zekker, Ivar; Kiviruut, Aimar; Rikmann, Ergo; Mandel, Anni; Jaagura, Madis; Tenno, Toomas; Artemchuk, Oleg; Rubin, Sergio dC; Tenno, Taavo (2019). Enhanced Efficiency of Nitritating-Anammox Sequencing Batch Reactor Achieved at Low Decrease Rates of Oxidation-Reduction Potential. Environmental Engineering Science, 36 (3), 350−360. 10.1089/ees.2018.0225
Mandel, A.; Zekker, I; Jaagura, M.; Tenno, T. (2019). Enhancement of anoxic phosphorus uptake of denitrifying phosphorus removal process by biomass adaption. International Journal of Environmental Science and Technology, 16 (10), 5965−5978. 10.1007/s13762-018-02194-2
Kulikouskaya, V. I.; Lazouskaya, M. E.; Agabekov, V. E. (2019). Features of the Formation of Interpolyelectrolyte Complexes Based on Chitosan and Pectin. Theoretical and Experimental Chemistry, 54 (6), 375−385. 10.1007/s11237-019-09584-8
Puntscher, Hannes; Hankele, Svenja; Tillmann, Katharina; Attakpah, Eva; Braun, Dominik; Kütt, Mary-Liis; Del Favero, Giorgia; Aichinger, Georg; Pahlke, Gudrun; Hoeger, Harald; Marko, Doris; Warth, Benedikt (2019). First insights into Alternaria multi-toxin in vivo metabolism. Toxicology Letters, 301, 168−178. 10.1016/j.toxlet.2018.10.006
Markkinen, Niko; Laaksonen, Oskar; Nahku, Ranno; Kuldjärv, Rain; Yanga, Baoru (2019). Impact of lactic acid fermentation on acids, sugars, and phenolic compounds in black chokeberry and sea buckthorn juices. Food Chemistry, 286, 204−215. 10.1016/j.foodchem.2019.01.189
Taivosalo, A.; Kriščiunaite, T.; Stulova, I.; Part, N.; Rosend, J.; Sõrmus, A.; Vilu, R. (2019). Ripening of Hard Cheese Produced from Milk Concentrated by Reverse Osmosis. Foods, 8 (5), #165. 10.3390/foods8050165
Kaleda, A.; Haleva, L.; Sarusi, G.; Pinsky, T.; Mangiagalli, M.; Bar Dolev, M.; Lotti, M.; Nardini, M.; Braslavsky, I. (2019). Saturn-shaped ice burst pattern and fast basal binding of an ice-binding protein from an Antarctic bacterial consortium. Langmuir, 35 (23), 7337−7346. 10.1021/acs.langmuir.8b01914
Rosend, J.; Kuldjärv, R.; Rosenvald, S.; Paalme, T. (2019). The effects of apple variety, ripening stage, and yeast strain on the volatile composition of apple cider. Heliyon, 5 (6), #e01953. 10.1016/j.heliyon.2019.e01953
Rosend, J.; Kuldjärv, R.; Arju, G.; Nisamedtinov, I. (2019). Yeast performance characterisation in different cider fermentation matrices. Agronomy Research, 17 (5), 2040−2053. 10.15159/AR.19.178
2018
Peebo, K.; Neubauer, P. (2018). Application of Continuous Culture Methods to Recombinant Protein Production in Microorganisms. Microorganisms, 6 (3), #56. 10.3390/microorganisms6030056
Panebianco, C.; Kelman, E.; Vene, K.; Gioffreda, D.; Tavano, F.; Vilu, R.; Terracciano, F.; Pata, I.; Adamberg, K.; Andriulli, A.; Pazienza, V. (2018). Cancer sniffer dogs: how can we translate this peculiarity in the laboratory medicine? Results of a pilot study on gastrointestinal cancers. Clinical Chemistry and Laboratory Medicine (CCLM), 56 (1), 138−146. 10.1515/cclm-2016-1158
Adamberg, Kaarel; Adamberg, Signe; Ernits, Karin; Larionova, Anneli; Voor, Tiia; Jaagura, Madis; Visnapuu, Triinu; Alamäe, Tiina (2018). Composition and metabolism of fecal microbiota from normal and overweight children are differentially affected by melibiose, raffinose and raffinose-derived fructans. Anaerobe, 52, 100−110. 10.1016/j.anaerobe.2018.06.009
Taivosalo, A.; Kriščiunaite, T.; Seiman, A.; Part, N.; Stulova, I.; Vilu, R. (2018). Comprehensive analysis of proteolysis during 8 months of ripening of high-cooked Old Saare cheese. Journal of Dairy Science, 101 (2), 944−967. 10.3168/jds.2017-12944
Aichinger, Georg; Puntscher, Hannes; Beisl, Julia; Kütt, Mary-Liis; Warth, Benedikt; Marko, Doris (2018). Delphinidin protects colon carcinoma cells against the genotoxic effects of the mycotoxin altertoxin II. Toxicology Letters, 284, 136−142. 10.1016/j.toxlet.2017.12.002
Kulikouskaya, V. I.; Lazouskaya, M. E.; Kraskouski, A. N.; Agabekov, V. E. (2018). Formation and Properties of Multilayer Films Based on Polyethyleneimine and Bovine Serum Albumin. Russian Journal of Physical Chemistry A, 92 (1), 146−152. 10.1134/S0036024418010132
Kazantseva, J.; Ivanov, R.; Gasik, M.; Neuman, T.; Hussainova, I. (2018). Graphene-Augmented Nanofiber Scaffolds Trigger Gene Expressions Switching of Four Cancer Cell Types. ACS Biomaterials Science Engineering, 4 (5), 1622−1629. 10.1021/acsbiomaterials.8b00228
Kazantseva, J.; Hussainova, I.; Ivanov, R.; Neuman, T.; Gasik, M. (2018). Hybrid graphene–ceramic nanofibre network for spontaneous neural differentiation of stem cells. Interface Focus, 8 (3), #20170037. 10.1098/rsfs.2017.0037
Lozovskaya, M. E.; Kulikovskaya, V. I.; Ignatovich, Zh. V.; Koroleva, E. V.; Agabekov, V. E. (2018). Hydrogel Nanoparticles of Chitosan-Folic-Acid Conjugate with Imatinib Methanesulfonate. Pharmaceutical Chemistry Journal, 52 (2), 127−132. 10.1007/s11094-018-1777-6
Kaleda, A.; Tsanev, R.; Klesment, T.; Vilu, R.; Laos, K. (2018). Ice cream structure modification by ice-binding proteins. Food Chemistry, 246, 164−171. 10.1016/j.foodchem.2017.10.152
Panebianco, C.; Adamberg, K.; Jaagura, M.; Copetti, M.; Fontana, A.; Adamberg, S.; Kolk, K.; Vilu, R.; Andriulli, A.; Pazienza, V. (2018). Influence of gemcitabine chemotherapy on the microbiota of pancreatic cancer xenografted mice. Cancer Chemotherapy and Pharmacology, 81 (4), 773−782. 10.1007/s00280-018-3549-0
Stalidzans, Egils; Seiman, Andrus; Peebo, Karl; Komasilovs, Vitalijs; Pentjuss, Agris (2018). Model-based metabolism design: constraints for kinetic and stoichiometric models. Biochemical Society Transactions, 46 (2), 261−267. 10.1042/BST20170263
Sadam, Helle; Pihlak, Arno; Kivil, Anri; Pihelgas, Susan; Jaago, Mariliis; Adler, Priit; Vilo, Jaak; Vapalahti, Olli; Neuman, Toomas; Lindholm, Dan; Partinen, Markku; Vaheri, Antti; Palm, Kaia (2018). Prostaglandin D2 Receptor DP1 Antibodies Predict Vaccine-induced and Spontaneous Narcolepsy Type 1: Large-scale Study of Antibody Profiling. EBioMedicine, 29, 47−59. 10.1016/j.ebiom.2018.01.043
Del Favero, Giorgia; Woelflingseder, Lydia; Braun, Dominik; Puntscher, Hannes; Kütt, Mary-Liis; Dellafiora, Luca; Warth, Benedikt; Pahlke, Gudrun; Dall'Asta, Chiara; Adam, Gerhard; Marko, Doris (2018). Response of intestinal HT-29 cells to the trichothecene mycotoxin deoxynivalenol and its sulfated conjugates. Toxicology Letters, 295, 424−437. 10.1016/j.toxlet.2018.07.007
Kortesniemi, M.; Rosenvald, S.; Laaksonen, O.; Vanag, A.; Ollikka, T.; Vene, K.; Yang, B. (2018). Sensory and chemical profiles of Finnish honeys of different botanical origins and consumer preferences. Food Chemistry, 246, 351−359. 10.1016/j.foodchem.2017.10.069
Mangiagalli, M.; Sarusi, G.; Kaleda, A.; Bar Dolev, M.; Nardone, V.; Vena, V. F.; Braslavsky, I.; Lotti, M.; Nardini, M. (2018). Structure of a bacterial Ice Binding Protein with two faces of interaction with ice. FEBS Journal, 285, 1653−1666. 10.1111/febs.14434
Adamberg, K; Kolk, K; Jaagura, M; Vilu, R; Adamberg, S (2018). The composition and metabolism of faecal microbiota is specifically modulated by different dietary polysaccharides and mucin: an isothermal microcalorimetry study. Beneficial Microbes, 9 (1), 21−34. 10.3920/BM2016.0198
Puntscher, Hannes; Kütt, Mary-Liis; Skrinjar, Philipp; Mikula, Hannes; Podlech, Joachim; Fröhlich, Johannes; Marko, Doris; Warth, Benedikt (2018). Tracking emerging mycotoxins in food: development of an LC-MS/MS method for free and modified Alternaria toxins. Analytical and Bioanalytical Chemistry, 410 (18), 4481−4494. 10.1007/s00216-018-1105-8
2017
Paalme, T.; Vilbaste, A.; Kevvai, K.; Nisamedtinov, I.; Tanilas, K. (2017). Assessment of bioavailable B vitamin content in food using in vitro digestibility assay and LC-MS SIDA. Analytical and Bioanalytical Chemistry, 1−10. 10.1007/s00216-017-0592-3
Tripathi, V.; Edrisi, S. A.; Chen, B.; Gupta, V. K.; Vilu, R.; Gathergood, N.; Abhilash, P. C. (2017). Biotechnological Advances for Restoring Degraded Land for Sustainable Development. Trends in Biotechnology, 35 (9), 847−859. 10.1016/j.tibtech.2017.05.001
Mangiagalli, M.; Bar-Dolev, M.; Tedesco, P.; Natalello, A.; Kaleda, A.; Brocca, S.; de Pascale, D.; Pucciarelli, S.; Miceli, C.; Braslavsky, I.; Lotti, M. (2017). Cryo-protective effect of an ice-binding protein derived from Antarctic bacteria. FEBS Journal, 284 (1), 163−177. 10.1111/febs.13965
Panebianco, C.; Adamberg, K.; Adamberg, S.; Saracino, C.; Jaagura, M.; Kolk, K.; Di Chio, A. G.; Graziano, P.; Vilu, R.; Pazienza, V. (2017). Engineered Resistant-Starch (ERS) Diet Shapes Colon Microbiota Profile in Parallel with the Retardation of Tumor Growth in In Vitro and In Vivo Pancreatic Cancer Models. Nutrients, 9 (4), #331. 10.3390/nu9040331
Ruiz Rodriguez, Luciana G.; Aller, Kadri; Bru, Elena; De Vuyst, Luc; Hebert, Elvira M.; Mozzi, Fernanda (2017). Enhanced mannitol biosynthesis by the fruit origin strain Fructobacillus tropaeoli CRL 2034. Applied Microbiology and Biotechnology, 101 (15), 6165−6177. 10.1007/s00253-017-8395-1
Laaksonen, O.; Kuldjärv, R.; Paalme, T.; Mira Virkki, M.; Yang, B. (2017). Impact of apple cultivar, ripening stage, fermentation type and yeast strain on phenolic composition of apple ciders. Food Chemistry, 233, 29−37. 10.1016/j.foodchem.2017.04.067
Surženko, M.; Kontram, K.; Sarand, I. (2017). PCR–based fingerprinting and identification of contaminative fungi isolated from rye breads. Agronomy Research, 15 (1), 288−297.
Kirs, M.; Karo, E.; Lumi, P. (2017). Strategic Behaviour of Research Groups within the Entrepreneurial University Policy Rhetoric: The Estonian Biotechnology Sector. Science and Public Policy, 44 (6), 802−820. 10.1093/scipol/scx015
Akk, E., Søndergaard, T.E, Sørensen, J.L, Giese, H., Kütt, M.L., Edesi, L., Lõiveke, H. and E. Lauringson (2017). The effects of nitrogen rates and intercropping on the occurrence of Fusarium spp. on barley kernels. Agronomy Research, 15 (S2), 1267−1275.
2016
Laks, K.; Kirsipuu, T.; Dmitrijeva, T.; Salumets, A.; Palumaa, P. (2016). Assessment of Blood Contamination in Biological Fluids Using MALDI-TOF MS. The Protein Journal, 35 (3), 171−176. 10.1007/s10930-016-9657-y
Bondarenko, Olesja M; Ivask, Angela; Kahru, Anne; Vija, Heiki; Titma, Tiina; Visnapuu, Meeri; Joost, Urmas; Pudova, Ksenia; Adamberg, Signe; Visnapuu, Triinu; Alamäe, Tiina. (2016). Bacterial polysaccharide levan as stabilizing, non-toxic and functional coating material for microelement-nanoparticles. Carbohydrate Polymers, 136, 710−720. 10.1016/j.carbpol.2015.09.093
Viiard, E.; Bessmeltseva, M.; Simm, J.; Talve, T.; Aaspõllu, A; Paalme, T.; Sarand, I. (2016). Diversity and Stability of Lactic Acid Bacteria in Rye Sourdoughs of Four Bakeries with Different Propagation Parameters. PLoS ONE, 11 (2), e0148325. 10.1371/journal.pone.0148325
Kazantseva, J.; Ivanov, R.; Gasik, M.; Neuman, T.; Hussainova, I. (2016). Graphene-augmented nanofiber scaffolds demonstrate new features in cells behaviour. Scientific Reports, 6, #30150. 10.1038/srep30150
Jaagura, M.; Taal, K.; Koppel, I.; Tuvikene, J.; Timmusk, T.; Tamme, R. (2016). Rat NEURL1 3'UTR is alternatively spliced and targets mRNA to dendrites. Neuroscience Letters, 635, 71−76. 10.1016/j.neulet.2016.10.041
Kevvai, K.; Kütt, M.-L.; Nisamedtinov, I.; Paalme, T. (2016). Simultaneous utilization of ammonia, free amino acids and peptides during fermentative growth of Saccharomyces cerevisiae. Asymmetric Michael Addition of an Alanine Derivative, 122 (1), 110−115. 10.1002/jib.298
Kazantseva, J.; Sadam, H.; Neuman, T.; Palm, K. (2016). Targeted alternative splicing of TAF4: a new strategy for cell reprogramming. Scientific Reports, 6, 30852−30852. 10.1038/srep30852
Seisonen, S.; Vene, K.; Koppel, K. (2016). The current practice in the application of chemometrics for correlation of sensory and gas chromatographic data. Food Chemistry, 210 (1), 530−540. 10.1016/j.foodchem.2016.04.134
Sannik, Urmas; Pitk, Peep; Lepasalu, Lembit; Poikalainen, Väino (2016). Tool for the Assessment and Prediction of Animal By-product Resources. Waste and Biomass Valorization, 7 (2), 397−404. 10.1007/s12649-015-9447-3
Sadam, H.; Liivas, U.; Kazantseva, A.; Pruunsild, P.; Kazantseva, J.; Timmusk, T.; Neuman, T.; Palm, K. (2016). GLI2 cell-specific activity is controlled at the level of transcription and RNA processing: Consequences to cancer metastasis. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, 1862 (1), 46−55 10.1016/j.bbadis.2015.10.008
2015
Adamberg, K.; Valgepea, K.; Vilu, R. (2015). Advanced continuous cultivation methods for systems microbiology. Microbiology, 161 (9), 1707−1719. 10.1099/mic.0.000146
Sannik, Urmas; Lepasalu, Lembit; Soidla, Riina; Põldvere, Aarne; Saar, Raili; Tänavots, Alo; Poikalainen, Väino (2015). Calculation model for the assessment of animal by-product resources in Estonian meat industry. Agronomy Research, 13 (4), 1053−1063.
Seisonen, S.; Kivima, E.; Vene, K. (2015). Characterization of the aroma profile of different honeys and corresponding flowers using solid phase microextraction and gas chromatography-mass spectrometry/olfactometry. Food Chemistry, 169, 34−40. 10.1016/j.foodchem.2014.07.125
Kirsipuu, T.; Laks, K.; Velthut-Meikas, A.; Levkov, L.; Salumets, A.; Palumaa, P. (2015). Comprehensive elucidation of amino acid profile in human follicular fluid and plasma of in vitro fertilization patients. Gynecological Endocrinology, 31 (SUP1), 9−17. 10.3109/09513590.2015.1085186
Jõul, P.; Lees, H.; Vaher, M.; Kobrin, E-G.; Kaljurand, M.; Kuhtinskaja, M. (2015). Development of a capillary electrophoresis method with direct UV detection for the analysis of thiodiglycol and its oxidation products. Electrophoresis, 36, 1202−1207. 10.1002/elps.201500038
Vallner, L.; Gavrilova, O.; Vilu, R. (2015). Environmental risks and problems of the optimal management of an oil shale semi-coke and ash landfill in Kohtla-Järve, Estonia. The Science of The Total Environment, 524, 400−415. 10.1016/j.scitotenv.2015.03.130
Aller, Kadri; Adamberg, Kaarel; Reile, Indrek; Timarova, Veronica; Peebo, Karl; Vilu, Raivo (2015). Excess of threonine compared with serine promotes threonine aldolase activity in Lactococcus lactis IL1403. Microbiology, 161 (5), 1073−1080. 10.1099/mic.0.000071
Esquerre, T.; Moisan, A.; Chiapello, H.; Arike, L.; Vilu, R.; Gaspin, C.; Cocaign-Bousquet, M.; Girbal, L. (2015). Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates. BMC Genomics, 16, #275. 10.1186/s12864-015-1482-8
Yau, Johnathon; Hunt, Kaarel E.; McDougall, Laura; Kennedy, Alan R.; Nelson, David J. (2015). Half-sandwich nickel(II) complexes bearing 1,3-di(cycloalkyl)imidazol-2-ylidene ligands. Beilstein Journal of Organic Chemistry, 11, 2171−2178. 10.3762/bjoc.11.235
Kriisa, Marie; Sinijärv, Hedi; Vaasa, Angela; Enkvist, Erki; Kostenko, Sergiy; Moens, Ugo; Uri, Asko (2015). Inhibition of CREB Phosphorylation by Conjugates of Adenosine Analogues and Arginine-Rich Peptides, Inhibitors of PKA Catalytic Subunit. ChemBioChem, 16 (2), 312−319. 10.1002/cbic.201402526
Valgepea, K.; Peebo, K.; Adamberg, K.; Vilu, R. (2015). Lean-proteome strains – next step in metabolic engineering. Frontiers in Bioengineering and Biotechnology, 3, #11. 10.3389/fbioe.2015.00011
Adamberg, Kaarel; Tomson, Katrin; Talve, Tiina; Pudova, Ksenia; Puurand, Marju; Visnapuu, Triinu; Alamäe, Tiina; Adamberg, Signe (2015). Levan Enhances Associated Growth of Bacteroides, Escherichia, Streptococcus and Faecalibacterium in Fecal Microbiota. PLoS ONE, 10 (12), e0144042. 10.1371/journal.pone.0144042
Stulova, I.; Kabanova, N.; Kriščiunaite, T.; Adamberg, K.; Laht, T.-M.; Vilu, R. (2015). Microcalorimetric study of the growth of Streptococcus thermophilus in renneted milk. Frontiers in Microbiology, 6, #79. 10.3389/fmicb.2015.00079
Peebo, K.; Valgepea, K.; Maser, A.; Nahku, R.; Adamberg, K.; Vilu, R. (2015). Proteome reallocation in Escherichia coli with increasing specific growth rate. Molecular BioSystems, 11 (4), 1184−1193. 10.1039/C4MB00721B
Ahelik, Ave; Mändar, Reet; Korrovits, Paul; Karits, Peeter; Talving, Elle; Rosenstein, Karin; Jaagura, Madis; Salumets, Andres; Kullisaar, Tiiu. (2015). Systemic oxidative stress could predict assisted reproductive technique outcome. Journal of Assisted Reproduction and Genetics, 32 (5), 699−704. 10.1007/s10815-015-0466-6
Kazantseva, J.; Tints, K.; Neuman, T.; Palm, K. (2015). TAF4 controls differentiation of human neural progenitor cells through hTAF4-TAFH activity. Journal of Molecular Neuroscience, 55 (1), 160−166. 10.1007/s12031-014-0295-6
Wightman, G.; Emery, F.; Austin, C.; Andersson, I.; Harcus, L.; Arju, G.; Steven, C. (2015). The interaction of fingermark deposits on metal surfaces and potential ways for visualisation. Forensic Science International, 249, 241−254. 10.1016/j.forsciint.2015.01.035
Mazina, Olga; Allikalt, Anni; Heinloo, Annika; Reinart-Okugbeni, Reet; Kopanchuk, Sergei; Rinken, Ago (2015). cAMP Assay for GPCR Ligand Characterization: Application of BacMam Expression System. Methods in molecular biology, 1272, 65−77. 10.1007/978-1-4939-2336-6_5
2014
Põldvere, A.; Lepasalu, L.; Tänavots, A.; Olt, J.; Sannik, U.; Sats, A.; Saar, R.; Martinson, R.; Poikalainen, V. (2014). An alternative method for meat shear energy estimation during ageing. Agronomy Research, 12 (3), 793−800.
Kütt, M-L.; Stagsted, J. (2014). Caseins from bovine colostrum and milk strongly bind piscidin-1, an antimicrobial peptide from fish. International Journal of Biological Macromolecules, 70, 364−372. 10.1016/j.ijbiomac.2014.06.063
Kivima, E.; Seiman, A.; Pall, R.; Sarapuu, E.; Martverk, K.; Laos, K. (2014). Characterization of Estonian honeys by botanical origin. Proceedings of the Estonian Academy of Sciences, 63 (2), 183−192. 10.3176/proc.2014.2.08
Hälvin, K., Nisamedtinov, I., Paalme, T. (2014). Comparison of different extraction methods to determine free and bound forms of B-group vitamins in quinoa. Analytical and Bioanalytical Chemistry, 406 (28), 7355−7366. 10.1007/s00216-014-8122-z
Peebo, K.; Valgepea, K.; Nahku, R.; Riis, G.; Õun, M.; Adamberg, K.; Vilu, R. (2014). Coordinated activation of PTA-ACS and TCA cycles strongly reduces overflow metabolism of acetate in Escherichia coli. Applied Microbiology and Biotechnology, 98 (11), 5131−5143. 10.1007/s00253-014-5613-y
Koppel, K.; Chambers, E. IV; Vázquez-Araújoa, L.; Timberg, L.; Carbonell-Barrachinad, Á. A.; Suwonsichone, S. (2014). Cross-country comparison of pomegranate juice acceptance in Estonia, Spain, Thailand, and United States. Food Quality and Preference, 31, 116−123. 10.1016/j.foodqual.2013.03.009
Adamberg, Signe; Tomson, Katrin; Vija, Heiki; Puurand, Marju; Kabanova, Natalja; Visnapuu, Triinu; Jõgi, Eerik; Alamäe, Tiina; Adamberg, Kaarel (2014). Degradation of fructans and production of propionic acid by Bacteroides thetaiotaomicron are enhanced by the shortage of amino acids. Frontiers in Nutrition, 1 (21), 1−10. 10.3389/fnut.2014.00021
Orro, Kadri; Smirnova, Olga; Arshavskaja, Jelena; Salk, Kristiina; Meikas, Anne; Pihelgas, Susan; Rumvolt, Reet; Kingo, Külli; Kazarjan, Aram; Neuman, Toomas; Spee, Pieter (2014). Development of TAP, a non-invasive test for qualitative and quantitative measurements of biomarkers from the skin surface. Biomarker Research, 2 (20), #20. 10.1186/2050-7771-2-20
Kazantseva, J.; Palm, K. (2014). Diversity in TAF proteomics: consequences for cellular differentiation and migration. International Journ