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TFTAK Scientific Research

Publications by #teamTFTAK


Bashiri, B., Cropotova, J., Kvangarsnes, K., Gavrilova, O., Vilu, R.
Environmental and Economic Life Cycle Assessment of Enzymatic Hydrolysis-Based Fish Protein and Oil Extraction.

Pihelas, S., Ehala-Aleksejev, K., Kuldjärv, R., Jõeleht, A., Kazantseva, J., Adamberg, K. 
Short-term pectin-enriched smoothie consumption has beneficial effects on the gut microbiota of low-fiber consumers.

Li, B., Arju, G., Taivosalo, A., Lints, T., Krišciunaite, T., Vilu, R., Lyne, J., Roustel, S., Kelly, A.L., McSweeney, P.L.H.
Proteolytic activity of three variants of fermentation-produced chymosin on sodium caseinate and during Cheddar cheese ripening.


Berg, H. Y., Arju, G., Becerra-Rodríguez, C., Galeote, V., Nisamedtinov, I.
Unlocking the secrets of peptide transport in wine yeast: insights into oligopeptide transporter functions and nitrogen source preferences.


Andreson, M., Kazantseva, J., Malv, E., Kuldjärv, R., Priidik, R., Kütt, M.-L. 

Evaluation of Microbial Dynamics of Kombucha Consortia upon Continuous Backslopping in Coffee and Orange Juice. 10.3390/foods12193545

Abner, K., Šverns, P., Arold, J., Morell, I., Lints, T., Medri, S., Seiman, A., Adamberg, K., Vilu, R.

Self-reproduction and doubling time limits of different cellular subsystems. 10.1038/s41540-023-00306-4

Traksmaa, A., Kaleda, A., Nurme, B., Laos, K.

Effect of quality properties of added gluten on the texture and sensory properties of rye and buckwheat breads. 10.15159/ar.23.082

Pismennõi, D., Kattel, A., Belouah, I., Nahku, R., Vilu, R., Kobrin, E.-G.

The Quantitative Measurement of Peptidoglycan Components Obtained from Acidic Hydrolysis in Gram-Positive and Gram-Negative Bacteria via Hydrophilic Interaction Liquid Chromatography Coupled with Mass Spectrometr. 10.3390/microorganisms11092134

Jakobson, K., Kaleda, A., Adra, K., Tammik, M.-L., Vaikma, H.; Kriščiunaite, T.; Vilu, R.

Characterization of techno-functional and sensory properties of commercial plant protein powders. 10.3390/foods12142805

Taivosalo, A, Stulova, I., Kütt, M.-L., Kriščiunaite, T., Lints, T., Gimaeva, T., Tamm, M.

Peptide Mapping with LC-HRMS and In-Silico Tools for Evaluation of Potential Allergenicity of Commercially Available Whey Protein Hydrolysates. 10.3390/app13137402

Zhogoleva, A., Alas, M., Rosenvald, S.

Characterization of odor-active compounds of various pea preparations by GC-MS, GC-O, and their correlation with sensory attributes. 10.1016/j.fufo.2023.100243 

Bljahhina, A.; Kuhtinskaja, M.; Kriščiunaite, T.
Development of extraction method for determination of saponins in soybean-based yoghurt alternatives: effect of sample pH. 10.3390/foods12112164

Saarniit, K.; Lang, H.; Kuldjärv, R.; Laaksonen, O.; Rosenvald, S.
The Stability of Phenolic Compounds in Fruit, Berry, and Vegetable Purees Based on Accelerated Shelf-Life Testing Methodology. 10.3390/foods12091777

Kütt, M.-L.; Orgusaar, K.; Stulova, I.; Priidik, R.; Pismennõi, D.; Vaikma, H.; Kallastu, A.; Zhogoleva, A.; Morell, I.; Kriščiunaite, T. 
Starter culture growth dynamics and sensorial properties of fermented oat drink. 10.1016/j.heliyon.2023.e15627

Bashiri B., Zehtabvar M., Gavrilova O., Vilu R. 
Change in the carbon footprint of Iranians’ food consumption from 1961 to 2019: A decomposition analysis of drivers. 10.15159/ar.23.018

Lazouskaya, M.; Vetik, I.; Tamm, M.; Uppuluri, K.; Scheler, O.
Binary RuO2–CuO Electrodes Outperform RuO2 Electrodes in Measuring the pH in Food Samples. 10.1021/acsomega.3c00538

Bljahhina, A.; Pismennõi, D.; Kriščiunaite, T.; Kuhtinskaja, M.; Kobrin, E.-G.
Quantitative Analysis of Oat (Avena sativa L.) and Pea (Pisum sativum L.) Saponins in Plant-Based Food Products by Hydrophilic Interaction Liquid Chromatography Coupled with Mass Spectrometry. 10.3390/foods12050991


Kapitanov, I.; Raba, G.; Spulak, M.; Vilu, R.; Karpichev, Y.; Gathergood, N.

Design of Sustainable Ionic Liquids Based on L-Phenylalanine and L-Alanine Dipeptides: Synthesis, Toxicity and Biodegradation Studies. 10.1016/j.molliq.2023.121285

Kallastu, A.; Malv, E.; Aro, V.; Meikas, A.; Vendelin, M.; Kattel, A.; Nahku, R.; Kazantseva, K. Absolute quantification of viable bacteria abundances in food by next-generation sequencing: Quantitative NGS of viable microbes. 10.1016/j.crfs.2023.100443


Reidzane, S.; Gramatina, I.; Galoburda, R.; Komasilovs, V.; Zacepins, A.; Bljahhina, A.; Kince, T.; Traksmaa, A.; Klava, D. The changes of fructan, glucan and mannan in the technological process of the wholegrain wheat bead fermented with the spontaneous sourdough of hull-less barley. 10.3390/foods12010155


Ye Tian, Ying Zhou, Marie Kriisa, Maret Anderson, Oskar Laaksonen, Mary-Liis Kütt, Maike Föste, Małgorzata Korzeniowska, Baoru Yang. Effects of fermentation and enzymatic treatment on phenolic compounds and soluble proteins in oil press cakes of canola (Brassica napus). 10.1016/j.foodchem.2022.135339

Natalja Part, Jekaterina Kazantseva, Sirli Rosenvald, Aili Kallastu, Helen Vaikma, Tiina Kriščiunaite, Dmitri Pismennõi, Ene Viiard. Microbiological, chemical, and sensorial characterisation of commercially available plant-based yoghurt alternatives. 10.1016/j.fufo.2022.100212

Anna Kattel, Indrek Morell, Valter Aro, Petri-Jaan Lahtvee, Raivo Vilu, Arvi Jõers, Ranno Nahku

Detailed analysis of metabolism reveals growth-rate-promoting interactions between Anaerostipes caccae and Bacteroides spp. 10.1016/j.anaerobe.2022.102680

Xia, X.; Arju, G.; Taivosalo, A.; Lints, T.; Kriščiunaite, T.; Vilu, R.; Corrigan, B.M. ; Gai, N.; Fenelon, M.A.;  Tobin, J.T.; Kilcawley, K.; Kelly, A.L.; McSweeney, P.L.H.; Sheehan, J.J. Effect of β-casein reduction and high heat treatment of micellar casein concentrate on proteolysis, texture and the volatile profile of resultant Emmental cheese during ripening. 10.1016/j.idairyj.2022.105540


Vaikma, H.; Metsoja, G.; Bljahhina, A.; Rosenvald, S. Individual differences in sensitivity to bitterness focusing on oat and pea preparations. 10.1016/j.fufo.2022.100206


Eha, Kairit; Kaleda, Aleksei; Menert, Anne; Laos, Katrin. Water Sorption Behaviour of Commercial Furcellaran.  10.1016/j.heliyon.2022.e11056


Leppik, K.; Lang, H.; Kuhtinskaja, M.; Rosenvald, S.The Use of Lipid Oxidation Indicators to Assess the Quality Deterioration of Potato Chips during Accelerated Shelf-Life Tests. 10.36400/J.Food.Stab.5.2.2022-0015


Joncer Naibaho, Aneta Wojdyło, Małgorzata Korzeniowska, Oskar Laaksonen, Maike Föste, Mary-LiisKütt, BaoruYang.

Antioxidant activities and polyphenolic identification by UPLC-MS/MS of autoclaved brewers' spent grain. 10.1016/j.lwt.2022.113612


Kaarel Erik Hunt, Alfonso T. García-Sosa, Tatsiana Shalima, Uko Maran, Raivo Vilub and Tõnis Kanger

Deacetylation of HMO building blocks using immobilized CAL-B to synthesize 6'-GL, an HMO. 10.1039/D2OB00550F

Andreson, M.; Kazantseva, J.; Kuldjärv, R.; Malv, E.; Vaikma, H.; Kaleda, A.; Kütt, M-L.; Vilu, R.

Characterisation of chemical, microbial and sensory profiles of commercial kombuchas. 10.1016/j.ijfoodmicro.2022.109715

Krauter, V.; Leppik, K.; Bauer, A.-S.; Milousi, M.; Dörnyei, K. R.; Ganczewski, G.; Krepil, J.; Varzakas, T.

Cereal and Confectionary Packaging: Assessment of Sustainability and Environmental Impact with a Special Focus on Greenhouse Gas Emissions. 10.3390/foods11091347

Kriisa, M.; Taivosalo, A.; Föste, M.; Kütt, M-L.; Viirma, M.; Priidik, R.; Korzeniowska, M.; Tian, Y.; Laaksonen, O.; Yang, B.; Vilu, R. Effect of enzyme‐assisted hydrolysis on brewer's spent grain protein solubilization – peptide composition and sensory properties. 10.1016/j.afres.2022.100108

Ye Tian, Marie Kriisa, Maike Föste, Mary-Liis Kütt, Ying Zhou, Oskar laaksonen, Baoru Yang.

Impact of enzymatic pre-treatment on composition of nutrients and phytochemicals of canola (Brassica napus) oil press residues. 10.1016/j.foodchem.2022.132911

Arju, G.; Berg, H. Y.; Lints, T.; Nisamedtinov, I. Methodology for Analysis of Peptide Consumption by Yeast during Fermentation of Enzymatic Protein Hydrolysate Supplemented Synthetic Medium Using UPLC-IMS-HRMS. 10.3390/fermentation8040145

Sepp, E.; Smidt, I.; Rööp.; Štšepetova, J.; Kõljalg, S.; Mikelsaar, M.; Soidla, I.; Ainsaar, M.; Kolk, H.; Vallas, M.; Jaagura, M.; Mändar, R. Comparative analysis of gut microbiota in centenarians and young people: impact of eating habits and childhood living environment. 10.3389/fcimb.2022.851404

Kärt Leppik, Anna-Sophia Bauer, Victoria Krauter, Ioannis Anestopoulus, Kata Calic, Mihalis Panagiotidis, Maria Sagriopoulou, Theodoras, Varzakas, Ilke Uysal Ünalan, Maria Milousi. Cereal and Confectionary Packaging: Background, Application and Shelf-Life Extension. 10.3390/foods11050697

Kriščiunaite, T; Tanilas, K. Development of LC-MS-ESI-TOF method for quantification of phytates in food using 13C-labelled maize as internal standard. 10.1007/s00216-021-03770-1

Kokina, A.; Tanilas, K.; Ozolina, Z.; Pleiko, K.; Shvirksts, K.; Vamza, I.; Liepins, J. Purine Auxotrophic Starvation Evokes Phenotype Similar to Stationary Phase Cells in Budding Yeast. 10.3390/jof8010029


Madis Jaagura, Natalja Part, Kaarel Adamberg, Jekaterina Kazantseva, Ene Viiard. Consumption of multi-fiber enriched yogurt is associated with increase of bifidobacteria and butyrate producing bacteria in human fecal microbiota. 10.1016/j.jff.2021.104899

Naibaho, J.; Butula, N.; Jonuzi, E.; Korzeniowska, M.; Laaksonen, O.; Föste, M.; Kütt, M-L.; Yang, B.. Potential of brewers’ spent grain in yogurt fermentation and evaluation of its impact in rheological behaviour, consistency, microstructural properties and acidity profile during the refrigerated storage. 10.1016/j.foodhyd.2021.107412


Gasik Michael; Ivanov Roman; Kazantseva Jekaterina; Bilotsky Yevgen; Hussainova Irina (2021). Biomechanical Features of Graphene-Augmented Inorganic Nanofibrous Scaffolds and Their Physical Interaction with Viruses. 2D Materials, 14 (1), 164. 10.3390/ma14010164

Reidzane, S.; Kruma, Z.; Kazantseva, J.; Traksmaa, A.; Klava, D. (2021). Determination of technological parameters and characterization of microbiota of the spontaneous sourdough fermentation of hull-less barley. Foods, 10 (10). 10.3390/foods10102253

Pismennõi, Dmitri; Kiritsenko, Vassili; Marhivka, Jaroslav; Kütt, Mary-Liis; Vilu, Raivo (2021). Development and Optimisation of HILIC-LC-MS Method for Determination of Carbohydrates in Fermentation Samples. Molecules, 26 (12), 3669. 10.3390/molecules26123669

Uppuluri, K.; Szwagierczak, D.; Zaraska, K.; Lazouskaya, M.; Tamm, M. (2021). Fabrication, Potentiometric Characterization, and Application of Screen-Printed RuO2 pH Electrodes for Water Quality Testing. Sensors, 21 (5399). 10.3390/s21165399

Lazouskaya, Maryna; Stulova, Irina; Sõrmus, Aavo; Scheler, Ott; Tiisma, Kalle; Vinter, Toomas; Loov, Roman; Tamm, Martti (2021). Front-face Fluorimeter for the Determination of Cutting Time of Cheese Curd. Foods, 10, 576. 10.3390/foods 10030576

Angelis, D. De; Kaleda, A.; Pasqualone, A.; Vaikma, H.; Squeo, G.; Caponio, F.; Summo, C. (2021). How to Balance the Yield and Protein Content of Air-classified Pulse Flour: the Influence of the Restriction Valve. Chemical Engineering Transactions, 87, 241−246. 10.3303/CET2187041

Laaksonen, Oskar; Kahala, Minna; Marsol-Vall, Alexis; Blasco, Lucia; Järvenpää, Eila; Rosenvald, Sirli; Virtanen, Mikaa; Tarvainen, Marko; Yang, Baoru. (2021). Impact of lactic acid fermentation on sensory and chemical quality of dairy analogues prepared from lupine (Lupinus angustifolius L.) seeds. Food Chemistry, 346, 128852 10.1016/j.foodchem.2020.128852

Eha, Kairit; Pehk, Tõnis; Heinmaa, Ivo; Kaleda, Aleksei; Laos, Katrin (2021). Impact of short-term heat treatment on the structure and functional properties of commercial furcellaran compared to commercial carrageenans. Heliyon, 7, e06640 10.1016/j.heliyon.2021.e06640

Jaagura, Madis; Viiard, Ene; Karu‐Lavits, Kätrin; Adamberg, Kaarel (2021). Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota. MicrobiologyOpen, 10 (3). 10.1002/mbo3.1194

Vaikma, H.; Kaleda, A.; Rosend, J.; Rosenvald, S. (2021). Market mapping of plant-based milk alternatives by using sensory (RATA) and GC analysis. Future Foods, 4. 10.1016/j.fufo.2021.100049

Kazantseva, Jekaterina; Malv, Esther; Kaleda, Aleksei; Kallastu, Aili; Meikas, Anne (2021). Optimisation of sample storage and DNA extraction for human gut microbiota studies. BMC Microbiology, 21, 158. 10.1186/s12866-021-02233-y

Kaleda, A.; Talvistu, K.; Vaikma, H.; Tammik, M.-L.; Rosenvald, S.; Vilu, R. (2021). Physicochemical, textural, and sensorial properties of fibrous meat analogs from oat-pea protein blends extruded at different moistures, temperatures, and screw speeds. Future Foods, 4 (100092). 10.1016/j.fufo.2021.100092

Kivima, E.; Tanilas, K.; Martverk, K.; Rosenvald, S.; Timberg, L.; Laos, K. (2021). The Composition, Physicochemical Properties, Antioxidant Activity, and Sensory Properties of Estonian Honeys. Foods, 10 (3), #511. 10.3390/foods10030511


Maser, A.; Peebo, K.; Vilu, R.; Nahku, R. (2020). Amino acids are key substrates to Escherichia coli BW25113 for achieving high specific growth rate. Research in Microbiology, 171 (5-6), 185−193. 10.1016/j.resmic.2020.02.001

Arju, G.; Taivosalo, A.; Pismennoi, D.; Lints, T.; Vilu, R.; Daneberga, Z.; Vorslova, S.; Renkonen, R.; Joenvaara, S. (2020). Application of the UHPLC-DIA-HRMS Method for Determination of Cheese Peptides. Foods, 9 (8), #979. 10.3390/foods9080979

Karron, E.; Runno-Paurson, E.; Lõiveke, H.; Islamov, B.; Kütt, M.-L.; Talve, T.; Lauringson, E.; Hõrak, H.; Edesi, E.; Niinemets, Ü. (2020). Application of widely used fungicides does not necessarily affect grain yield, and incidence of Fusarium spp. and mycotoxins DON, HT-2 and T-2 in spring barley in northern climates. KVASNY PRUMYSL, 66 (1), 215−223. 10.18832/kp2020.66.215

Witter, Steffi; Arju, Georg; Junusova, Marina; Kuhtinskaja, Maria; Samoson, Ago; Witter, Raiker; Vilu, Raivo (2020). Compound’s Pre-Screening of Withania somnifera, Baccopa monnieri and Centella asiatica Extracts. Journal of Biosciences and Medicines, 8 (9), 80−98. 10.4236/jbm.2020.89007

Kirsipuu, T.; Zadorožnaja, A.; Smirnova, J.; Friedemann, M.; Plitz, T.; Tõugu, V.; Palumaa, P. (2020). Copper(II)-binding equilibria in human blood. Scientific Reports, 10 (1), #5686. 10.1038/s41598-020-62560-4

Jõers, Arvi; Liske, Eliis; Tenson, Tanel (2020). Dividing subpopulation of Escherichia coli in stationary phase. Research in Microbiology, 171 (3-4), 153−157. 10.1016/j.resmic.2020.02.002

Kaleda, Aleksei; Talvistu, Karel; Tamm, Martti; Viirma, Maret; Rosend, Julia; Tanilas, Kristel; Kriisa, Marie; Part, Natalja; Tammik, Mari-Liis (2020). Impact of Fermentation and Phytase Treatment of Pea-Oat Protein Blend on Physicochemical, Sensory, and Nutritional Properties of Extruded Meat Analogs. Foods, 9 (8), 1059. 10.3390/foods9081059

Friedenthal, M.; Eha, K.; Kaleda, A.; Part, N.; Laos, K. (2020). Instability of low-moisture carrageenans as affected by water vapor sorption at moderate storage temperatures. SN Applied Sciences, 2, #243 . 10.1007/s42452-020-2032-9

Arike, Liisa; Seiman, Andrus; van der Post, Sjoerd; Pineiro, Ana M. Rodriguez; Ermund, Anna; Schutte, Andre; Backhed, Fredrik; Johansson, Malin E. V.; Hansson, Gunnar C. (2020). Protein Turnover in Epithelial Cells and Mucus along the Gastrointestinal Tract Is Coordinated by the Spatial Location and Microbiota. Cell Reports, 30 (4), 1077−1091. 10.1016/j.celrep.2019.12.068

Witter, S.; Samoson, A.; Vilu, R.; Witter, R. (2020). Screening of Nutraceuticals and Plant Extracts for Inhibition of Amyloid-beta Fibrillation. Journal of Alzheimer's Disease, 73 (3), 1003−1012. 10.3233/JAD-190758

Kamboj, N.; Kazantseva, J.; Rahmani, R.; Rodríguez, M. A.; Hussainova, I. (2020). Selective laser sintered bio-inspired silicon-wollastonite scaffolds for bone tissue engineering. Materials Science and Engineering C, 116, #111223. 10.1016/j.msec.2020.111223

Štšepetova, J.; Baranova, J.; Simm, J.; Parm, Ü.; Rööp, T.; Sokmann, S.; Korrovits, P.; Jaagura, M.; Rosenstein, K.; Salumets, A.; Mändar, R. (2020). The complex microbiome from native semen to embryo culture environment in human in vitro fertilization procedure. Reproductive Biology and Endocrinology, 18 (1), 1−13. 10.1186/s12958-019-0562-z

Adamberg, K.; Jaagura, M.; Aaspõllu, A.; Nurk, E.; Adamberg, S. (2020). The composition of faecal microbiota is related to the amount and variety of dietary fibres. International Journal of Food Sciences and Nutrition. 10.1080/09637486.2020.1727864

Adamberg, Kaarel; Raba, Grete; Adamberg, Signe (2020). Use of Changestat for Growth Rate Studies of Gut Microbiota. Frontiers in Bioengineering and Biotechnology, 8, ARTN 24. 10.3389/fbioe.2020.00024

Rosend, J.; Kaleda, A.; Kuldjärv, R.; Arju, G.; Nisamedtinov, I. (2020). The effect of apple juice clarification and concentration on cider fermentation and properties of the final product. Foods, 9, 1401. 10.3390/foods9101401


Maser, A.; Peebo, K.; Nahku, R. (2019). Avoiding amino acid depletion in a complex medium results in improved Escherichia coli BW25113 growth. Microbiology, 165 (1), 37−46. 10.1099/mic.0.000742

Gawin, Agnieszka; Peebo, Karl; Hans, Sebastian; Ertesvag, Helga; Irla, Marta; Neubauer, Peter; Brautaset, Trygve (2019). Construction and characterization of broad-host-range reporter plasmid suitable for on-line analysis of bacterial host responses related to recombinant protein production. Microbial Cell Factories, 18, ARTN 80. 10.1186/s12934-019-1128-7

Zekker, Ivar; Kiviruut, Aimar; Rikmann, Ergo; Mandel, Anni; Jaagura, Madis; Tenno, Toomas; Artemchuk, Oleg; Rubin, Sergio dC; Tenno, Taavo (2019). Enhanced Efficiency of Nitritating-Anammox Sequencing Batch Reactor Achieved at Low Decrease Rates of Oxidation-Reduction Potential. Environmental Engineering Science, 36 (3), 350−360. 10.1089/ees.2018.0225

Mandel, A.; Zekker, I; Jaagura, M.; Tenno, T. (2019). Enhancement of anoxic phosphorus uptake of denitrifying phosphorus removal process by biomass adaption. International Journal of Environmental Science and Technology, 16 (10), 5965−5978. 10.1007/s13762-018-02194-2

Kulikouskaya, V. I.; Lazouskaya, M. E.; Agabekov, V. E. (2019). Features of the Formation of Interpolyelectrolyte Complexes Based on Chitosan and Pectin. Theoretical and Experimental Chemistry, 54 (6), 375−385. 10.1007/s11237-019-09584-8

Puntscher, Hannes; Hankele, Svenja; Tillmann, Katharina; Attakpah, Eva; Braun, Dominik; Kütt, Mary-Liis; Del Favero, Giorgia; Aichinger, Georg; Pahlke, Gudrun; Hoeger, Harald; Marko, Doris; Warth, Benedikt (2019). First insights into Alternaria multi-toxin in vivo metabolism. Toxicology Letters, 301, 168−178. 10.1016/j.toxlet.2018.10.006

Markkinen, Niko; Laaksonen, Oskar; Nahku, Ranno; Kuldjärv, Rain; Yanga, Baoru (2019). Impact of lactic acid fermentation on acids, sugars, and phenolic compounds in black chokeberry and sea buckthorn juices. Food Chemistry, 286, 204−215. 10.1016/j.foodchem.2019.01.189

Taivosalo, A.; Kriščiunaite, T.; Stulova, I.; Part, N.; Rosend, J.; Sõrmus, A.; Vilu, R. (2019). Ripening of Hard Cheese Produced from Milk Concentrated by Reverse Osmosis. Foods, 8 (5), #165. 10.3390/foods8050165

Kaleda, A.; Haleva, L.; Sarusi, G.; Pinsky, T.; Mangiagalli, M.; Bar Dolev, M.; Lotti, M.; Nardini, M.; Braslavsky, I. (2019). Saturn-shaped ice burst pattern and fast basal binding of an ice-binding protein from an Antarctic bacterial consortium. Langmuir, 35 (23), 7337−7346. 10.1021/acs.langmuir.8b01914

Rosend, J.; Kuldjärv, R.; Rosenvald, S.; Paalme, T. (2019). The effects of apple variety, ripening stage, and yeast strain on the volatile composition of apple cider. Heliyon, 5 (6), #e01953. 10.1016/j.heliyon.2019.e01953

Rosend, J.; Kuldjärv, R.; Arju, G.; Nisamedtinov, I. (2019). Yeast performance characterisation in different cider fermentation matrices. Agronomy Research, 17 (5), 2040−2053. 10.15159/AR.19.178


Peebo, K.; Neubauer, P. (2018). Application of Continuous Culture Methods to Recombinant Protein Production in Microorganisms. Microorganisms, 6 (3), #56. 10.3390/microorganisms6030056

Panebianco, C.; Kelman, E.; Vene, K.; Gioffreda, D.; Tavano, F.; Vilu, R.; Terracciano, F.; Pata, I.; Adamberg, K.; Andriulli, A.; Pazienza, V. (2018). Cancer sniffer dogs: how can we translate this peculiarity in the laboratory medicine? Results of a pilot study on gastrointestinal cancers. Clinical Chemistry and Laboratory Medicine (CCLM), 56 (1), 138−146. 10.1515/cclm-2016-1158

Adamberg, Kaarel; Adamberg, Signe; Ernits, Karin; Larionova, Anneli; Voor, Tiia; Jaagura, Madis; Visnapuu, Triinu; Alamäe, Tiina (2018). Composition and metabolism of fecal microbiota from normal and overweight children are differentially affected by melibiose, raffinose and raffinose-derived fructans. Anaerobe, 52, 100−110. 10.1016/j.anaerobe.2018.06.009

Taivosalo, A.; Kriščiunaite, T.; Seiman, A.; Part, N.; Stulova, I.; Vilu, R. (2018). Comprehensive analysis of proteolysis during 8 months of ripening of high-cooked Old Saare cheese. Journal of Dairy Science, 101 (2), 944−967. 10.3168/jds.2017-12944

Aichinger, Georg; Puntscher, Hannes; Beisl, Julia; Kütt, Mary-Liis; Warth, Benedikt; Marko, Doris (2018). Delphinidin protects colon carcinoma cells against the genotoxic effects of the mycotoxin altertoxin II. Toxicology Letters, 284, 136−142. 10.1016/j.toxlet.2017.12.002

Kulikouskaya, V. I.; Lazouskaya, M. E.; Kraskouski, A. N.; Agabekov, V. E. (2018). Formation and Properties of Multilayer Films Based on Polyethyleneimine and Bovine Serum Albumin. Russian Journal of Physical Chemistry A, 92 (1), 146−152. 10.1134/S0036024418010132

Kazantseva, J.; Ivanov, R.; Gasik, M.; Neuman, T.; Hussainova, I. (2018). Graphene-Augmented Nanofiber Scaffolds Trigger Gene Expressions Switching of Four Cancer Cell Types. ACS Biomaterials Science Engineering, 4 (5), 1622−1629. 10.1021/acsbiomaterials.8b00228

Kazantseva, J.; Hussainova, I.; Ivanov, R.; Neuman, T.; Gasik, M. (2018). Hybrid graphene–ceramic nanofibre network for spontaneous neural differentiation of stem cells. Interface Focus, 8 (3), #20170037. 10.1098/rsfs.2017.0037

Lozovskaya, M. E.; Kulikovskaya, V. I.; Ignatovich, Zh. V.; Koroleva, E. V.; Agabekov, V. E. (2018). Hydrogel Nanoparticles of Chitosan-Folic-Acid Conjugate with Imatinib Methanesulfonate. Pharmaceutical Chemistry Journal, 52 (2), 127−132. 10.1007/s11094-018-1777-6

Kaleda, A.; Tsanev, R.; Klesment, T.; Vilu, R.; Laos, K. (2018). Ice cream structure modification by ice-binding proteins. Food Chemistry, 246, 164−171. 10.1016/j.foodchem.2017.10.152

Panebianco, C.; Adamberg, K.; Jaagura, M.; Copetti, M.; Fontana, A.; Adamberg, S.; Kolk, K.; Vilu, R.; Andriulli, A.; Pazienza, V. (2018). Influence of gemcitabine chemotherapy on the microbiota of pancreatic cancer xenografted mice. Cancer Chemotherapy and Pharmacology, 81 (4), 773−782. 10.1007/s00280-018-3549-0

Stalidzans, Egils; Seiman, Andrus; Peebo, Karl; Komasilovs, Vitalijs; Pentjuss, Agris (2018). Model-based metabolism design: constraints for kinetic and stoichiometric models. Biochemical Society Transactions, 46 (2), 261−267. 10.1042/BST20170263

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Vallner, L.; Gavrilova, O.; Vilu, R. (2015). Environmental risks and problems of the optimal management of an oil shale semi-coke and ash landfill in Kohtla-Järve, Estonia. The Science of The Total Environment, 524, 400−415. 10.1016/j.scitotenv.2015.03.130

Aller, Kadri; Adamberg, Kaarel; Reile, Indrek; Timarova, Veronica; Peebo, Karl; Vilu, Raivo (2015). Excess of threonine compared with serine promotes threonine aldolase activity in Lactococcus lactis IL1403. Microbiology, 161 (5), 1073−1080. 10.1099/mic.0.000071

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Adamberg, Kaarel; Tomson, Katrin; Talve, Tiina; Pudova, Ksenia; Puurand, Marju; Visnapuu, Triinu; Alamäe, Tiina; Adamberg, Signe (2015). Levan Enhances Associated Growth of Bacteroides, Escherichia, Streptococcus and Faecalibacterium in Fecal Microbiota. PLoS ONE, 10 (12), e0144042. 10.1371/journal.pone.0144042

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Pitk, P.; Kaparaju, P.; Palatsi, J.; Belen, F.; Vilu, R. (2014). Mesophilic co-digestion of dairy manure and lipid rich solid slaughterhouse wastes: process efficiency, limitations and floating granules formation. Bioresource Technology, 166, 168−177. 10.1016/j.biortech.2014.05.033

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Adamberg, S.; Sumeri, I.; Uusna, R.; Ambalam, P.; Kondepudi, K. K.; Adamberg, K.; Wadström, T.; Ljungh, Å. (2014). Survival and synergistic growth of mixed cultures of bifidobacteria and lactobacilli combined with prebiotic oligosaccharides in a gastrointestinal tract simulator. Microbial Ecology in Health and Disease, 25, 1−9. 10.3402/mehd.v25.23062

Pedastsaar, P.; Vaher, M.; Helmja, K.; Kulp, M.;Kaljurand, M.; Karp, K.; Raal, A.; Karathanos, V.; Püssa, T. (2014). The Chemical Composition of Red Wines made from Hybrid Grape and Common Crape. Proceedings of the Estonian Academy of Sciences, 63 (4), 444−453.

Klesment, T.; Stekolštšikova, J.; Laos, K. (2014). The influence of guar gum/furcellaran and guar gum/carrageenan stabilizer systems on the rheological and sensorial properties of ice cream during storage. Proceedings of the Estonian Academy of Sciences, 63 (2), 193−198. 10.3176/proc.2014.2.09

Paalme, T.; Kevvai, K.; Vilbaste, A.; Haelvin, K.; Nisamedtinov, I. (2014). Uptake and accumulation of B-group vitamers in Saccharomyces cerevisiae in ethanol-stat fed-batch culture. World Journal of Microbiology and Biotechnology, 30 (9), 2351−2359. 10.1007/s11274-014-1660-x

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Valgepea, K.; Adamberg, K.; Seiman, A.; Vilu, R. (2013). Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteins. Molecular BioSystems, 9 (9), 2344−2358. 10.1039/c3mb70119k

Viiard, E.; Mihhalevski, A.; Rühka, T.; Paalme, T.; Sarand, I. (2013). Evaluation of the microbial community in industrial rye sourdough upon continuous back-slopping propagation revealed Lactobacillus helveticus as the dominant species. Journal of Applied Microbiology, 114 (2), 404−412. 10.1111/jam.12045

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Kubáň, P.; Kobrin, E.-G.; Kaljurand, M. (2012). Capillary electrophoresis – A new tool for ionic analysis of exhaled breath condensate. Journal of Chromatography A, 1267 (7), 239−245. 10.1016/j.chroma.2012.06.085

Vaher, M.; Helmja, K.; Käsper, A.; Kurasin, M.; Väljamäe, P.; Kudrjasova, M.; Koel, M.; Kaljurand, M. (2012). Capillary electrophoretic monitoring of hydrothermal pre-treatment and enzymatic hydrolysis of willow: comparison with HPLC and NMR. Catalysis Today, 196 (1), 34−41. 10.1016/j.cattod.2012.02.047

Arike, L.; Valgepea, K.; Peil, L.; Nahku, R.; Adamberg, K.; Vilu, R. (2012). Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli. Journal of Proteomics, 75 (17), 5437−5448. 10.1016/j.jprot.2012.06.020

Kriščiunaite, T.; Stulova, I.; Taivosalo, A.; Laht, T.-M.; Vilu, R. (2012). Composition and renneting properties of raw bulk milk in Estonia. International Dairy Journal, 23 (1), 45−52. 10.1016/j.idairyj.2011.09.013

Adamberg, K.; Seiman, A.; Vilu, R. (2012). Increased Biomass Yield of Lactococcus lactis by Reduced Overconsumption of Amino Acids and Increased Catalytic Activities of Enzymes. PLoS ONE, 7 (10), e48223. 10.1371/journal.pone.0048223

Pitk, P.; Kaparaju, P.; Vilu, R. (2012). Methane potential of sterilized solid slaughterhouse wastes. Bioresource Technology, 116, 42−46. 10.1016/j.biortech.2012.04.038

Kabanova, N.; Stulova, I.; Vilu, R. (2012). Microcalorimetric study of the growth of bacterial colonies of Lactococcus lactis IL1403 in agar gels. Food Microbiology, 29 (1), 67−79. 10.1016/

Turks, M.; Rijkure, I.; Belyakov, S.; Zicāne, D.; Kumpiņš, V.; Bizdēna, Ē.; Meikas, A.; Valkna, A. (2012). On differences between racemic and enantiomerically pure forms of aziridine-2-carboxamide. Chemistry of Heterocyclic Compounds, 48 (6), 928−935. 10.1007/s10593-012-1067-2

Gavrilova, O.; Vilu, R. (2012). Production-based and consumption-based national greenhouse gas inventories: An implication for Estonia. Ecological Economics, 75, 161−173. 10.1016/j.ecolecon.2012.01.020

Mihhalevski, Anna; Heinmaa, Ivo; Traksmaa, Rainer; Pehk, Tõnis; Mere, Arvo; Paalme, Toomas (2012). Structural changes of starch during baking and staling of rye bread. Journal of Agricultural and Food Chemistry, 60 (34), 8492−8500. 10.1021/jf3021877

Sumeri, I.; Adamberg, S.; Uusna, R.; Sarand, I.; Paalme, T. (2012). Survival of cheese bacteria in a gastrointestinal tract simulator. International Dairy Journal, 25 (1), 36−41. 10.1016/j.idairyj.2011.12.016

Lints, T. (2012). The essentials of defining adaptation. IEEE Aerospace and Electronic Systems Magazine, 27 (1), 37−41. 10.1109/MAES.2012.6145439

Orumets, Kerti; Kevvai, Kaspar; Nisamedtinov, I; Tamm, T; Paalme, T. (2012). YAP1 over‐expression in Saccharomyces cerevisiae enhances glutathione accumulation at its biosynthesis and substrate availability levels. Biotechnology Journal, 7 (4), 566−568. 10.1002/biot.201100363


Kaseleht, K.; Paalme, T.; Mihhalevski, A.; Sarand, I. (2011). Analysis of volatile compounds produced by different species of lactobacilli in rye sourdough using multiple headspace extraction. International Journal of Food Science Technology, 46 (9), 1940−1946. 10.1111/j.1365-2621.2011.02705.x

Valgepea, K.; Adamberg, K.; Vilu, R. (2011). Decrease of energy spilling in Escherichia coli continuous cultures with rising specific growth rate and carbon wasting. BMC Systems Biology, 5, #106. 10.1186/1752-0509-5-106

Kaseleht, K.; Leitner, E.; Paalme, T. (2011). Determining Aroma-active Compounds in Kama Flour Using SPME-GC/MS and GC-Olfactometry. Flavour and Fragrance Journal, 26 (2), 122−128. 10.1002/ffj.2032

Koppel, K.; Chambers, E. IV; Chambers, D.H. (2011). Flavour and Acceptance of Estonian Cheeses. Agronomy Research, 9 (2), 409−414.

Mihhalevski, A.; Sarand, I.; Viiard, E.; Salumets, A.; Paalme, T. (2011). Growth characterization of individual rye sourdough bacteria by isothermal microcalorimetry. Journal of Applied Microbiology, 110 (2), 529−540. 10.1111/j.1365-2672.2010.04904.x

Vázquez-Araújo, L., Koppel, K., Chambers, E. IV, Adhikari, K., Carbonell-Barrachina, A. (2011). Instrumental and Sensory Aroma Profile of Pomegranate Juices from the USA: Differences between Fresh Juice and Commercial Juices. Flavour and Fragrance Journal, 26 (2), 129−138. 10.1002/ffj.2035

Nisamedtinov, I.; Kevvai, K.; Orumets, K.; Arike, L.; Sarand, I.; Korhola, M.; Paalme, T. (2011). Metabolic changes underlying the higher accumulation of glutathione in Saccharomyces cerevisiae mutants. Applied Microbiology and Biotechnology, 89 (4), 1029−1037. 10.1007/s00253-010-2946-z

Lahtvee, P.-J.; Adamberg, K.; Arike, L.; Nahku, R.; Aller, K.; Vilu, R. (2011). Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth rates. Microbial Cell Factories, 10, #12. 10.1186/1475-2859-10-12

Koppel, K.; Timberg, L.; Salumets, A.; Paalme, T. (2011). Possibility for a strawberry jam sensory standard. Journal of Sensory Studies, 26 (1), 71−80. 10.1111/j.1745-459X.2010.00323.x

Enkvist, E.; Vaasa, A.; Kasari, M.; Kriisa, M.; Ivan, T.; Ligi, K.; Raidaru, G.; Uri, A. (2011). Protein-Induced Long Lifetime Luminescence of Nonmetal Probes. ACS Chemical Biology, 6 (10), 1052−1062. 10.1021/cb200120v

Kaseleht, K., Paalme, T., Nisamedtinov, I. (2011). Quantitative Analysis of Acetaldehyde in Foods Consumed by Children using SPME/GC-MS(Tof), On-fiber Derivatization and Deuterated Acetaldehyde as an Internal Standard. Agronomy Research, 9 (2), 395−401.

Timberg, L.; Koppel, K.; Kuldjärv, R.; Paalme, T. (2011). Rainbow trout composition and fatty acid content in Estonia. Agronomy Research, 9 (2), 495−500.

Timberg, L.; Koppel, K.; Kuldjärv, R.; Paalme, T. (2011). Sensory and chemical properties of Baltic sprat (Sprattus sprattus balticus) and Baltic herring (Clupea harengus membras) in different catching seasons. Agronomy Research, 9 (2), 489−494.

Nahku, R.; Peebo, K.; Valgepea, K.; Barrick, J. E.; Adamberg, K.; Vilu, R. (2011). Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture. Microbiology-SGM, 157 (9), 2604−2610. 10.1099/mic.0.050658-0

Laos, K.; Kirs, E.; Pall, R.; Martverk, K. (2011). The crystallization behaviour of Estonian honeys. Agronomy Research, 9 (2), 427−432.

Kriščiunaite, T.; Stulova, I.; Kabanova, N.; Laht, T.-M.; Vilu, R. (2011). The effect of hydrogen peroxide on the growth of thermophilic lactic starter and acid gelation of UHT milk. International Dairy Journal, 21 (4), 239−246. 10.1016/j.idairyj.2010.11.012

Stulova, I.; Kabanova, N.; Kriščiunaite, T.; Laht, T.-M.; Vilu, R. (2011). The effect of milk heat treatment on the growth characteristics of lactic acid bacteria. Agronomy Research, 9 (2), 473−478.

Klesment, T.; Stekolštšikova, J.; Laos, K. (2011). The influence of hydrocolloids on storage quality of 10% dairy fat ice cream. Agronomy Research, 9 (2), 403−408.

Helmja, K.; Vaher, M.; Püssa, T.; Orav, A.; Viitak, A.; Levandi, T.; Kaljurand, M. (2011). Variation in the composition of the essential oils, phenolic compounds and mineral elements of Hypericum perforatum L. growing in Estonia. Natural Product Research, 25 (5), 496−510. 10.1080/14786411003792165


Gavrilova, O.; Vilu, R.; Vallner, L. (2010). A life cycle environmental impact assessment of oil shale produced and consumed in Estonia. Resources, Conservation Recycling, 55 (2), 232−245. 10.1016/j.resconrec.2010.09.013

Koppel, K., Chambers, E. IV (2010). Development and application of a lexicon to describe the flavor of pomegranate juice. Journal of Sensory Studies, 25 (6), 819−837. 10.1111/j.1745-459X.2010.00307.x

Sumeri, I.; Arike, L.; Stekolštšikova, J.; Uusna, R.; Adamberg, S. Adamberg, K.; Paalme, T. (2010). Effect of stress pretreatment on survival of probiotic bacteria in gastrointestinal tract simulator. Applied Microbiology and Biotechnology, 86 (6), 1925−1931. 10.1007/s00253-009-2429-2

Schmitz, A.; Thormann, W.; Moessner, L.; Theurillat, R.; Helmja, K.; Mevissen, M. (2010). Enantioselective CE analysis of hepatic ketamine metabolism in different species in vitro. Electrophoresis, 31, 1506−1516. 10.1002/elps.200900703

Nisamedtinov, I.; Kevvai, K.; Orumets, K.; Rautio, J.; Paalme, T. (2010). Glutathione accumulation in ethanol-stat fed-batch culture of Saccharomyces cerevisiae with a switch to cysteine feeding. Applied Microbiology and Biotechnology, 87 (1), 175−183. 10.1007/s00253-010-2502-x

Arike, L.; Nahku, R.; Borissova, M.; Adamberg, K.; Vilu, R. (2010). Identification and relative quantification of proteins in Escherichia coli proteome by "up-front" collision-induced dissociation. European journal of mass spectrometry, 16 (2), 227−235. 10.1255/ejms.1068

Skerget, K.; Taler-Vercic, A.; Bavdek, A.; Hodnik, V.; Ceru, S.; Tusek-Znidaric, M.; Kumm, T.; Pitsi, D.; Pompe-Novak, M.; Palumaa, P.; Soriano, S.; Kopitar-Jerala, N.; Turk, V.; Anderluh, G.; Zerovnik, E. (2010). Interaction between oligomers of stefin B and amyloid-beta in vitro and in cells. Journal of Biological Chemistry, 285 (5), 3201−3210. 10.1074/jbc.M109.024620

Stulova, I.; Adamberg, S.; Krisciunaite, T.; Kampura, M.; Blank, L.; Laht, T.-M. (2010). Microbiological quality of raw milk produced in Estonia. Letters in Applied Microbiology, 51 (6), 683−690. 10.1111/j.1472-765X.2010.02951.x

Vaher, M.; Matso, K.; Levandi, T.; Helmja, K.; Kaljurand, M. (2010). Phenolic compounds and antioxidant activity of bran, flour and whole grain of different wheat varieties. Procedia Chemistry, 2, 76−82.

Nahku, R.; Valgepea, K.; Lahtvee, P.-J.; Erm, S.; Abner, K.; Adamberg, K.; Vilu, R. (2010). Specific growth rate dependent transcriptome profiling of Escherichia coli K12 MG1655 in accelerostat cultures. Journal of Biotechnology, 145 (1), 60−65. 10.1016/j.jbiotec.2009.10.007

Valgepea, K.; Adamberg, K.; Nahku, R.; Lahtvee, P.-J.; Arike, L.; Vilu, R. (2010). Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase. BMC Systems Biology, 4, #166. 10.1186/1752-0509-4-166

Spitsmeister, M.; Adamberg, K.; Vilu, R. (2010). UPLC/MS based method for quantitative determination of fatty acid composition in Gram-negative and Gram-positive bacteria. Journal of Microbiological Methods, 82 (3), 288−295. 10.1016/j.mimet.2010.07.006


Helmja, K.; Vaher, M.; Püssa, T.; Kaljurand, M. (2009). Analysis of the stable free radical scavenging capability of artificial polyphenol mixtures and plant extracts by capillary electrophoresis and liquid chromatography-diode array detection-tandem mass spectrometry. Journal of Chromatography A, 1216 (12), 2417−2423.

Riid, A.; Preden, J.; Pahtma, R.; Serg, R.; Lints, T. (2009). Automatic Code Generation for Embedded Systems from High-Level Models. Electronics and Electrical Engineering, 95 (7), 33−36.

Enkvist, E.; Kriisa, M.; Roben, M.; Kadak, G.; Raidaru, G.; Uri, A. (2009). Effect of the structure of adenosine mimic of bisubstrate-analog inhibitors on their activity towards basophilic protein kinases. Bioorganic Medicinal Chemistry Letters, 21 (1), 6098−6101. 10.1016/j.bmcl.2009.09.026

Helmja, K.; Borissova, M.; Knjazeva, T.; Jaanus, M.; Muinasmaa, U.; Kaljurand, M.; Vaher, M. (2009). Fraction collection in capillary electrophoresis for various stand-alone mass spectrometers. Journal of Chromatography A, 1216 (17), 3666−3673.

Kabanova, N.; Kazarjan, A.; Stulova, I.; Vilu, R. (2009). Microcalorimetric study of growth of Lactococcus lactis IL1403 at different glucose concentrations in broth. Thermochimica Acta, 496 (1-2), 87−92. 10.1016/j.tca.2009.07.003

Kazantseva, A.; Sepp, M.; Kazantseva, J.; Sadam, H.; Pruunsild, P.; Timmusk, T.; Neuman, T.; Palm, K. (2009). N-terminally truncated BAF57 isoforms contribute to the diversity of SWI/SNF complexes in neurons. Journal of Neurochemistry, 109 (3), 807−818. 10.1111/j.1471-4159.2009.06005.x

Adamberg, K.; Lahtvee, P.-J.; Valgepea, K.; Abner, K.; Vilu, R. (2009). Quasi steady state growth of Lactococcus lactis in glucose-limited acceleration stat (A-stat) cultures. Antonie van Leeuwenhoek, 95 (3), 219−226. 10.1007/s10482-009-9305-z

Lahtvee, P.-J.; Valgepea, K.; Nahku, R.; Abner, K.; Adamberg, K.; Vilu, R. (2009). Steady state growth space study of Lactococcus lactis in D-stat cultures. Antonie van Leeuwenhoek, 96 (4), 487−496 . 10.1007/s10482-009-9363-2


Dugo, Paola; Herrero, Miguel; Giuffrida, Daniele; Kumm, Tiina; Dugo, Giovanni; Mondello, Luigi (2008). Application of Comprehensive Two-Dimensional Liquid Chromatography To Elucidate the Native Carotenoid Composition in Red Orange Essential Oil. Journal of Agricultural and Food Chemistry, 56 (10), 3478−3485. 10.1021/jf800144v

Dugo, Paola; Cacciola, Francesco; Kumm, Tiina; Dugo, Giovanni; Mondello, Luigi (2008). Comprehensive multidimensional liquid chromatography: Theory and applications. Journal of Chromatography A, 1184 (1-2), 353−368. 10.1016/j.chroma.2007.06.074

Dugo, Paola; Herrero, Miguel; Kumm, Tiina; Giuffrida, Daniele; Dugo, Giovanni; Mondello, Luigi (2008). Comprehensive normal-phase x reversed-phase liquid chromatography coupled to photodiode array and mass spectrometry detectors for the analysis of free carotenoids and carotenoid esters from mandarin. Journal of Chromatography A, 1189, 196−206.

Helmja, K.; Vaher, M.; Püssa, T.; Raudsepp, P.; Kaljurand, M. (2008). Evaluation of antioxidative capability of the tomato (Solanum lycopersicum) skin constituents by capillary electrophoresis and high-perfoemance liquid chromatography. Electrophoresis, 3980−3988.

Mondello, Luigi; Herrero, Miguel; Kumm, Tiina; Dugo, Paola; Cortes, Hernan; Dugo, Giovanni (2008). Quantification in Comprehensive Two-Dimensional Liquid Chromatography. Analytical Chemistry, 80 (14), 5418−5424. 10.1021/ac800484y

Sumeri, I.; Arike, L.; Adamberg, K.; Paalme, T. (2008). Single bioreactor gastrointestinal tract simulator for study of survival of probiotic bacteria. Applied Microbiology and Biotechnology, 80 (2), 317−324. 10.1007/s00253-008-1553-8

Nisamedtinov, I.; Lindsey, G. G.; Karreman, R.; Orumets, K.; Koplimaa, M.; Kevvai, K.; Paalme, T. (2008). The response of the yeast Saccharomyces cerevisiae to sudden vs. gradual changes in environmental stress monitored by expression of the stress response protein Hsp12p. FEMS Yeast Research, 8 (6), 829−838. 10.1111/j.1567-1364.2008.00391.x

Dugo, P.; Kumm, T.; Cacciola, F.; Dugo, G.; Mondello, L. (2008). Multidimensional Liquid Chromatographic Separations Applied to the Analysis of Food Samples. Journal of Liquid Chromatography Related Technologies, 31, 1758−1807. 10.1080/10826070802128888


Helmja, K.; Vaher, M.; Püssa, T.; Kamsol, K.; Orav, A.; Kaljurand, M. (2007). Bioactive components of the hop strobilus: Comparison of different extraction methods by capillary electrophoretic and chromatographic methods. Journal of Chromatography A, 1155 (2), 222−229.

Voronova, A.; Kazantseva, J.; Tuuling, M.; Sokolova, N.; Sillard, R.;L Palumaa, P. (2007). Cox17, a copper chaperone for cytochrome c oxidase: Expression, purification and formation of mixed disulfide adducts with thiol reagents. Protein Expression and Purification, 53 (1), 138−144. 10.1016/j.pep.2006.11.014

Kasemets K., Nisamedtinov I., Laht T.-M.,Abner K., Paalme T. (2007). Growth characteristics of Saccharomyces cerevisiae S288C in changing environmental conditions: auxo-accelerostat study. Antonie van Leeuwenhoek, 92 (1), 109−128. 10.1007/s10482-007-9141-y

Voronova, A.; Meyer-Klaucke, W.; Meyer, T.; Rompel, A.; Krebs, B.; Kazantseva, J.; Sillard, R.; Palumaa, P. (2007). Oxidative switches in functioning of mammalian copper chaperone Cox17. Biochemical Journal, 408 (1), 139−148. 10.1042/BJ20070804


Paalme, Toomas; Nisamedtinov, Ildar; Abner, Kristo; Laht, Tiiu-Maie; Drews, Monika; Pehk, Tõnis (2006). Application of 13C-[2]- and 13C-[1,2] acetate in metabolic labelling studies of yeast and insect cells. Antonie van Leeuwenhoek, 89, 443−457. 10.1007/s10482-005-9053-7

Sarmiento, C.; Nigul, L.; Kazantseva, J.; Buschmann, M.; Truve, E. (2006). AtRLI2 is an endogenous suppressor of RNA silencing. Plant Molecular Biology, 61, 153−163. 10.1007/s11103-005-0001-8

Dugo, P.; Kumm, T.; Crupi, M.L.; Cotroneo, A.; Mondello, L. (2006). Comprehensive Two-Dimensional Liquid Chromatography Combined with Mass Spectrometric Detection in the Analyses of Triacylglycerols in Natural Lipidic Matrices. Journal of Chromatography A, 1112, 269−275.

Dugo, Paola; Kumm, Tiina; Fazio, Alessia; Dugo, Giovanni; Mondello, Luigi (2006). Determination of beef tallow in lard through a multidimensional off-line Non Aqueous Reversed Phase/Argentation LC method coupled to Mass Spectrometry. Journal of Separation Science, 29, 567−575.

Dugo, Paola; Škeříková, Veronika; Kumm, Tiina; Trozzi, Alessandra; Jandera, Pavel; Mondello, Luigi (2006). Elucidation of carotenoid patterns in citrus products by means of comprehensive normal phase x reversed phase liquid cromatography. Analytical Chemistry, 78 (22), 7743−7750. 10.1021/ac061290q

Tahkoniemi, H.; Helmja, K.; Menert, A.; Kaljurand, M. (2006). Fermentation reactor coupled with capillary electropherophoresis for on-line bioprocess monitoring. Journal of Pharmaceutical and Biomedical Analysis, 41 (5), 1585−1591. 10.1016/j.jpba.2006.01.042

Meloni, G.; Zovo, K.; Kazantseva, J.; Palumaa, P.; Vasak, M. (2006). Organization and assembly of metal-thiolate clusters in epithelium-specific metallothionein-4. Journal of Biological Chemistry, 281 (21), 14588−14595. 10.1074/jbc.M601724200

Dugo, Paola; Kumm, Tiina; Chiofalo, Biagina; Cotroneo, Antonella; Mondello, Luigi (2006). Separation of triacylglycerols in a complex lipidic matrix by using comprehensive two-dimensional liquid chromatography coupled with atmospheric pressure chemical ionization mass spectrometric detection. Journal of Separation Science, 29 (8), 1146−1154. 10.1002/jssc.200500476


Adamberg, K.; Adamberg, S.; Laht, T.-M.; Ardö, Y.; Paalme, T. (2006). Study of Cheese Associated Lactic Acid Bacteria under Carbohydrate-Limited Conditions Using D-stat Cultivation. Food Biotechnology, 20 (2), 143−160. 10.1080/08905430600709412



Dugo, Paola; Kumm, Tiina; Lo Presti, Maria; Chiofalo, Biagina; Salimei, Elisabetta; Fazio, Alessia; Cotroneo, Antonella; Mondello, Luigi. (2005). Determination of triacylglycerols in donkey milk by using high performance liquid chromatography coupled with atmospheric pressure chemical ionization mass spectrometry. Journal of Separation Science, 28, 1023−1030.

Kilk, K.; El-Andaloussi, S.; Jarver, P.; Meikas, A.; Valkna, A.; Bartfai, T.; Kogerman, P.; Metsis, M.; Langel, U. (2005). Evaluation of transportan 10 in PEI mediated plasmid delivery assay. Journal of Controlled Release, 103 (2), 511−523. 10.1016/j.jconrel.2004.12.006

Adamberg, K.; Antonsson, M.; Vogensen, FK.; Nielsen, EW.; Kask, S.; Moller, PL.; Ardo, Y (2005). Fermentation of carbohydrates from cheese sources by non-starter lactic acid bacteria isolated from semi-hard Danish cheese. International Dairy Journal, 15, 873−882.



Menert, A.; Paalme, V.; Juhkam, J.; Vilu, R (2004). Characterization of sulfate-reducing bacteria in yeast industry waste by microcalorimetry and PCR amplification. Thermochimica Acta, 420, 89−98. 10.1016/j.tca.2003.12.032

Orav, Anne.; Stulova, Irina.; Kailas, Tiiu.; Müürisepp, Mati (2004). Effect of storage on the essential oil composition of Piper nigrum L. fruits of different ripening states. Journal of Agricultural and Food Chemistry, 52 (9), 2582−2586.


Kasemets, K.; Drews, M.; Nisamedtinov, I.; Adamberg, K.; Paalme, T (2003). Modification of A-stat for the characterization of microorganisms. Journal of Microbiological Methods, 55 (1), 187−200.

Kask, S.; Adamberg, K.; Orlowski, A.; Vogensen, FK.; Moller, PL.; Ardo, Y.; Paalme, T (2003). Physiological properties of Lactobacillus paracasei, L. Danicus and L-curvatus strains isolated from Estonian semi-hard cheese. Food Research international, 36, 1037−1046.

Adamberg, K.; Kask, S.; Laht, TM.; Paalme, T (2003). The effect of temperature and ph on the growth of lactic acid bacteria: a ph-auxostat study. International Journal of Food Microbiology, 85, 171−183.

Blonskaja, V.; Menert, A.; Vilu, R (2003). Use of two-stage anaerobic treatment for distillery waste. Advances in Environmental Research, 7 (3), 671−678.



Kulp, Maria; Vassiljeva, Irina; Vilu, Raivo; Kaljurand, Mihkel (2002). Monitoring of the degradation of phenols by Rhodococcus bacteria by using micellar electrokinetic chromatography. Journal of Separation Science, 25, 1129−1135.

Laht, Tiiu-Maie; Kask, Signe; Elias, Priit; Adamberg, Kaarel; Paalme, Toomas (2002). Role of Arginine in the Development of Secondary Microflora in Swiss-Type Cheese. International Dairy Journal, 12 (10), 831−840.


Menert, A.; Liiders, M.; Kurissoo, T.; Vilu, R (2001). Microcalorimetric monitoring of anaerobic digestion processes. Journal of Thermal Analysis and Calorimetry, 64 (1), 281−291.

Ehala, S.; Vassiljeva, I.; Kuldvee, R.; Vilu, R.; Kaljurand, M (2001). On-line coupling of a miniaturized bioreactor with capillary electrophoresis, via a membrane interface, for monitoring the production of organic acids by microorganisms. Fresenius Journal of Analytical Chemistry, 371 (2), 168−173.


Chen, J.; Dagher, SM.; Fisher, CE.; Grunow, W.; Hattan, DG.; Kawamura, Y.; Knaap, AGAC.; Kuznesof, PM.; Larsen, JC.; Meyland, I.; Pascal, G.; Riordan, M.; Walker, R.; Wilson, JD.; Akkelidou, D.; Bellinger, DC.; Bolger, M.; Carrington, C.; Dewailly, E.; DiNovi, M., Eriksen, GS.; Greig, J.; Hecker, EFF.; Herrman, JL.; Hotchkiss, JH.; Madsen, C.; Magos, LPA.; Mattia, A.; Moy, G.; Munro, IC.; Nishikawa, A.; Pennington, JA.; Petersen, B.; Renwick, AG.; Resnik, S.; Schlatter, J.; Sipes, GI.; Speijers, GJA.; Vavasour, E.; Verger, JP.; Vilu, R.; Wallin, H.; Weatherwax, J.; Whitehouse, DB (2000). Evaluation of certain food additives and contaminants. Evaluation of Certain Food Additives and Contaminants, 53rd Report, 896, 1−128.


Rozkov, A.; Vassiljeva, I.; Kurvet, M.; Kahru, A.; Preis, S.; Kharchenko, A.; Krichevskaya, M.; Liiv, M.; Kaard, A.; Vilu, R (1999). Laboratory study of bioremediation of rocket fuel-polluted groundwater. Water Research, 33 (5), 1303−1313.


Kallastu, A.; Hõrak, R.; Kivisaar, M. (1998). Identification and characterization of IS1411, a new insertion sequence which causes transcriptional activation of the phenol degradation genes in Pseudomonas putida. Journal of Bacteriology, 180 (20), 5306−5312.


Rozkov, A.; Kaard, A.; Vilu, R (1997). Biodegradation of dissolved jet fuel in chemostat by a mixed bacterial culture isolated from a heavily polluted site. Biodegradation, 8 (6), 363−369.

Gudima, S.O.; Kazantseva, E.G.; Kostjuk, D.A. (1997). Deoxynucleotide-containing RNAs: a novel class of templates for HIV-I reverse transcriptase. Nucleic Acids Research, 25 (22), 4614−4618.

Paalme, T.; Elken, R.; Vilu, R.; Korhola, M. (1997). Growth efficiency of Saccharomyces cerevisiae on glucose/ethanol media with a smooth change in the dilution rate (A-stat). Enzyme and Microbial Technology, 20 (3), 174−181.

Paalme, T.; Elken, R.; Kahru, A.; Vanatalu, K.; Vilu, R. (1997). The growth rate control in Escherichia coli at near to maximum growth rates: the A-stat approach. Antonie van Leeuwenhoek, 71 (3), 217−230.


Paalme, T.; Kahru, A.; Elken, R.; Vanatalu, K.;Tiisma, K.; Vilu, R. (1995). The Computer- Controlled Continuous Culture of Escherichia coli with Smooth Change of Dilution rate. A-stat. Journal of Microbiological Methods, 24, 145−153.

Drews, M.; Paalme, T.; Vilu, R. (1995). The growth and nutrient utilization of the insect cell line Spodoptera frugiperda Sf9 cells in batch and continuous culture. Journal of Biotechnology, 40 (3), 187−198.


Vanatalu, K.; Paalme, T.; Vilu, R.; Burkhardt, N.; Junemann, R.; May, R.; Ruhl, M.; Wadzack, J.; Nierhaus, K.H. (1993). Large-scale preparation of fully deuterated cell components - ribosomes from Escherichis coli with high biological activity. European Journal of Biochemistry, 216 (1), 315−321.

Sarand, I.; Mae, A.; Vilu, R.; Heinaru, A. (1993). New derivatives of tol plasmid pww0. Journal of General Microbiology, 139, 2379−2385.


Paalme, T.; Tiisma, K.; Kahru, A.; Vanatalu, K; Vilu, R. (1990). Glucose-limited fed-batch cultivation of Escherichia coli with computer-controlled fixed growth rate. Biotechnology and Bioengineering, 35, 312−319.

Kahru, A.; Vilu, R. (1990). The role of the adenine nucleotides in the regulation of bacterial energy metabolism: theoretical problems and experimental pitfalls. Microbios. 62, 83−92.


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